File: DifferenceCovers.hpp

package info (click to toggle)
pbseqlib 5.3.5%2Bdfsg-4
  • links: PTS, VCS
  • area: main
  • in suites: bookworm
  • size: 7,020 kB
  • sloc: cpp: 77,250; python: 331; sh: 103; makefile: 41
file content (25 lines) | stat: -rw-r--r-- 1,508 bytes parent folder | download | duplicates (4)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
#ifndef _BLASR_DIFFERENCE_COVERS_HPP_
#define _BLASR_DIFFERENCE_COVERS_HPP_

#include <pbdata/Types.h>

#define N_COVERS 5
const UInt diffCovers[N_COVERS][60] = {
    {7, 3, 1, 2, 4, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
     0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0},
    {32, 7, 1, 2, 3, 4, 8, 12, 20, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
     0,  0, 0, 0, 0, 0, 0, 0,  0,  0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0},
    {64, 9, 1, 2, 3, 6, 15, 17, 35, 43, 60, 0, 0, 0, 0, 0, 0, 0, 0, 0,
     0,  0, 0, 0, 0, 0, 0,  0,  0,  0,  0,  0, 0, 0, 0, 0, 0, 0, 0, 0,
     0,  0, 0, 0, 0, 0, 0,  0,  0,  0,  0,  0, 0, 0, 0, 0, 0, 0, 0, 0},
    {111, 12, 1, 2, 3, 6, 13, 28, 37, 39, 45, 53, 66, 94, 0, 0, 0, 0, 0, 0,
     0,   0,  0, 0, 0, 0, 0,  0,  0,  0,  0,  0,  0,  0,  0, 0, 0, 0, 0, 0,
     0,   0,  0, 0, 0, 0, 0,  0,  0,  0,  0,  0,  0,  0,  0, 0, 0, 0, 0, 0},
    {2281, 58,   0,    1,    2,    3,    4,    5,    6,    7,    8,    9,    19,   38,   57,
     76,   95,   114,  133,  152,  171,  190,  229,  268,  307,  346,  385,  424,  463,  502,
     541,  580,  619,  658,  697,  736,  775,  814,  853,  892,  931,  951,  971,  991,  1011,
     1031, 1051, 1071, 1091, 1111, 1131, 1132, 1133, 1134, 1135, 1136, 1137, 1138, 1139, 1140}};

int InitializeDifferenceCover(UInt diffCoverSize, UInt &diffCoverLength, UInt *&diffCover);

#endif  // _BLASR_DIFFERENCE_COVERS_HPP_