File: CCSIterator.hpp

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#ifndef _BLASR_BASE_CCS_ITERATOR_HPP_
#define _BLASR_BASE_CCS_ITERATOR_HPP_

#include <pbdata/CCSSequence.hpp>

class CCSIterator
{
public:
    CCSSequence *seqPtr;
    int curPass;
    int numPasses;

    virtual void Initialize(CCSSequence *_seqPtr);

    virtual int GetNext(int &direction, int &startBase, int &numBases);

    void Reset();

    int GetNumPasses();
};

#endif