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#ifndef _BLASR_FRAGMENT_CCS_ITERATOR_HPP_
#define _BLASR_FRAGMENT_CCS_ITERATOR_HPP_
#include <vector>
#include <alignment/files/CCSIterator.hpp>
#include <alignment/utils/RegionUtils.hpp>
#include <pbdata/reads/RegionTable.hpp>
class FragmentCCSIterator : public CCSIterator
{
public:
RegionTable *regionTablePtr;
std::vector<ReadInterval> subreadIntervals;
std::vector<int> readIntervalDirection;
virtual void Initialize(CCSSequence *_seqPtr, RegionTable *_regionTablePtr);
virtual int GetNext(int &direction, int &startBase, int &numBases);
};
#endif
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