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#ifndef _BLASR_READER_AGGLOMERATE_IMPL_HPP_
#define _BLASR_READER_AGGLOMERATE_IMPL_HPP_
template <typename T_Sequence>
int ReaderAgglomerate::GetNext(T_Sequence &seq, int &randNum)
{
randNum = rand();
return GetNext(seq);
}
template <typename T_Sequence>
int ReadChunkByNReads(ReaderAgglomerate &reader, std::vector<T_Sequence> &reads, int maxNReads)
{
T_Sequence seq;
int nReads = 0;
while (nReads < maxNReads) {
if (reader.GetNext(seq)) {
reads.push_back(seq);
++nReads;
} else {
break;
}
}
return nReads;
}
template <typename T_Sequence>
int ReadChunkBySize(ReaderAgglomerate &reader, std::vector<T_Sequence> &reads, int maxMemorySize)
{
T_Sequence seq;
int nReads = 0;
int totalStorage = 0;
while (totalStorage < maxMemorySize) {
if (reader.GetNext(seq)) {
reads.push_back(seq);
totalStorage += seq.GetStorageSize();
nReads++;
} else {
break;
}
}
return nReads;
}
#endif
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