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#ifndef _BLASR_COMPARE_SEQUENCES_PRINTER_HPP_
#define _BLASR_COMPARE_SEQUENCES_PRINTER_HPP_
#include <fstream>
#include <iostream>
#include <alignment/algorithms/alignment/AlignmentUtils.hpp>
namespace CompareSequencesOutput {
void PrintHeader(std::ostream &out);
template <typename T_Alignment, typename T_QuerySequence, typename T_TargetSequence>
void Print(T_Alignment &alignment, T_QuerySequence &qseq, T_TargetSequence &tseq, std::ostream &out,
bool refForward = true);
}
#include "CompareSequencesPrinterImpl.hpp"
#endif
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