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#ifndef _BLASR_INTERVAL_ALIGNMENT_PRINTER_HPP_
#define _BLASR_INTERVAL_ALIGNMENT_PRINTER_HPP_
#include <alignment/datastructures/alignment/AlignmentCandidate.hpp>
#include <pbdata/FASTQSequence.hpp>
namespace IntervalOutput {
void Print(T_AlignmentCandidate &alignment, std::ostream &outFile);
// Print an alignment from a sam file in Interval (m 4) format.
void PrintFromSAM(AlignmentCandidate<> &alignment, std::ostream &outFile);
void PrintHeader(std::ostream &out);
}
#endif
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