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#ifndef _BLASR_SUFFIX_ARRAY_TYPES_HPP_
#define _BLASR_SUFFIX_ARRAY_TYPES_HPP_
#include <vector>
#include <alignment/suffixarray/SharedSuffixArray.hpp>
#include <alignment/suffixarray/SuffixArray.hpp>
#include <pbdata/Compare4BitCompressed.hpp>
#include <pbdata/CompressedSequence.hpp>
#include <pbdata/FASTASequence.hpp>
typedef SuffixArray<Nucleotide, std::vector<int> > DNASuffixArray;
typedef SuffixArray<Nucleotide, std::vector<int>, Compare4BitCompressed<Nucleotide>,
CompressedDNATuple<FASTASequence> >
CompressedDNASuffixArray;
#endif // _BLASR_SUFFIX_ARRAY_TYPES_HPP_
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