File: HDFAlnGroupGroup.hpp

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#ifndef _BLASR_HDF_ALN_GROUP_HPP_
#define _BLASR_HDF_ALN_GROUP_HPP_

#include <string>

#include <hdf/HDFArray.hpp>
#include <hdf/HDFGroup.hpp>
#include <pbdata/saf/AlnGroup.hpp>

class HDFAlnGroupGroup
{
public:
    HDFGroup alnGroup;
    HDFArray<unsigned int> idArray;
    HDFStringArray pathArray;

    bool Create(HDFGroup &parent);

    int AddPath(std::string path);

    int Initialize(HDFGroup &parent);

    void Read(AlnGroup &aln);

    ~HDFAlnGroupGroup();
};

#endif