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#ifndef _BLASR_HDF_REF_INFO_HPP_
#define _BLASR_HDF_REF_INFO_HPP_
#include <pbdata/saf/RefInfo.hpp>
class HDFRefInfoGroup
{
public:
HDFGroup refInfoGroup;
HDFStringArray fullNameArray;
HDFArray<uint32_t> idArray;
HDFArray<uint32_t> lengthArray;
HDFStringArray md5Array;
bool Create(HDFGroup &parent)
{
parent.AddGroup("RefInfo");
if (refInfoGroup.Initialize(parent.group, "RefInfo") == 0) {
return 0;
}
fullNameArray.Create(refInfoGroup, "FullName");
idArray.Create(refInfoGroup, "ID");
lengthArray.Create(refInfoGroup, "Length");
md5Array.Create(refInfoGroup, "MD5");
return true;
}
void AddRefInfo(std::string &fullName, unsigned int id, unsigned int length, std::string md5)
{
fullNameArray.Write(&fullName, 1);
idArray.Write(&id, 1);
lengthArray.Write(&length, 1);
md5Array.Write(&md5, 1);
}
unsigned int AddRefInfo(std::string &fullName, unsigned int length, std::string md5)
{
unsigned int numRefs = fullNameArray.size();
unsigned int id = numRefs + 1; // refInfo Id is 1 based
assert(numRefs == idArray.size() && numRefs == lengthArray.size() &&
numRefs == md5Array.size());
AddRefInfo(fullName, id, length, md5);
return id;
}
int Initialize(HDFGroup &parentGroup)
{
if (refInfoGroup.Initialize(parentGroup.group, "RefInfo") == 0) {
return 0;
}
if (fullNameArray.Initialize(refInfoGroup, "FullName") == 0) {
return 0;
}
if (idArray.Initialize(refInfoGroup, "ID") == 0) {
return 0;
}
if (lengthArray.Initialize(refInfoGroup, "Length") == 0) {
return 0;
}
if (md5Array.Initialize(refInfoGroup, "MD5") == 0) {
return 0;
}
return 1;
}
~HDFRefInfoGroup() { refInfoGroup.Close(); }
void Read(RefInfo &refInfo)
{
UInt nRow = fullNameArray.size();
refInfo.fullName.resize(nRow);
refInfo.id.resize(nRow);
refInfo.length.resize(nRow);
refInfo.md5.resize(nRow);
/*
if (refInfo.fullName.size() != refInfo.id.size() or
refInfo.id.size() != refInfo.length.size() or
refInfo.length.size() != refInfo.md5.size()) {
std::cout << "Error with the RefInfo group in a cmp.h5 file. The datasets " << std::endl
<< "are of different lengths but should be the same." << std::endl;
std::exit(EXIT_FAILURE);
}
*/
size_t i;
for (i = 0; i < refInfo.fullName.size(); i++) {
fullNameArray.Read(i, i + 1, &refInfo.fullName[i]);
}
for (i = 0; i < refInfo.md5.size(); i++) {
md5Array.Read(i, i + 1, &refInfo.md5[i]);
}
lengthArray.Read(0, refInfo.length.size(), &refInfo.length[0]);
idArray.Read(0, refInfo.id.size(), &refInfo.id[0]);
}
};
#endif
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