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#ifndef _BLASR_QUALITY_VALUE_HPP_
#define _BLASR_QUALITY_VALUE_HPP_
#include <cstdint>
#include <pbdata/ChangeListID.hpp>
typedef unsigned char QualityValue;
typedef float QualityProbability;
#define MIN_QUALITY_VALUE 0
#define MAX_QUALITY_VALUE 255
#ifndef _QVScale_
#define _QVScale_
enum QVScale
{
POverOneMinusP, // popularized by Illumina
PHRED
};
#endif
QualityValue ProbabilityToQualityValue(QualityProbability pErr, QVScale qvScale = POverOneMinusP);
QualityValue PacBioQVToPhred(QualityValue pbQV);
QualityValue ToPhred(QualityValue qv, QVScale qvScale = POverOneMinusP);
QualityProbability QualityValueToProbability(QualityValue qv, QVScale qvScale = POverOneMinusP);
QVScale DetermineQVScaleFromChangeListID(ChangeListID &cl);
#endif // _BLASR_QUALITY_VALUE_HPP_
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