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#ifndef _BLASR_READ_INTERVAL_HPP_
#define _BLASR_READ_INTERVAL_HPP_
#include <pbdata/reads/RegionAnnotation.hpp>
class RegionAnnotation;
class ReadInterval
{
public:
int start;
int end;
int score;
ReadInterval(int s = 0, int e = 0, int sc = 0) : start(s), end(e), score(sc){};
ReadInterval(const RegionAnnotation &ra)
: start(ra.GetStart()), end(ra.GetEnd()), score(ra.GetScore())
{
}
ReadInterval &operator=(const ReadInterval &rhs)
{
start = rhs.start;
end = rhs.end;
score = rhs.score;
return *this;
}
bool operator==(const ReadInterval &rhs) const
{
return (start == rhs.start and end == rhs.end and score == rhs.score);
}
inline friend std::ostream &operator<<(std::ostream &, const ReadInterval &);
int Length(void) const { return end - start; }
};
inline std::ostream &operator<<(std::ostream &ss, const ReadInterval &interval)
{
ss << interval.start << "_" << interval.end;
return ss;
}
#endif
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