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#ifndef _BLASR_READ_TYPE_HPP
#define _BLASR_READ_TYPE_HPP
#include <string>
class ReadType
{
public:
enum ReadTypeEnum
{
NoReadType = 0,
Standard = 1,
CCS = 2,
RCCS = 3,
POLYMERASE = 4,
HQREGION = 5,
SUBREAD = 6,
SCRAP = 7,
UNKNOWN = 8
};
static ReadTypeEnum ParseReadType(std::string &readTypeString);
static std::string ToString(const ReadType::ReadTypeEnum &readType);
};
//The READTYPE values encountered in secondary analysis will be limited to SUBREAD and CCS.
//POLYMERASE, HQREGION, SCRAP, and UNKNOWN will only be encountered in intermediate steps before
//secondary analysis.
//NoReadType, Standard and RCCS were used in CMP.H5 deprecated.
#endif
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