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/*
* =====================================================================================
*
* Filename: CCSIterator_gtest.cpp
*
* Description: Test alignment/files/CCSIterator.hpp
*
* Version: 1.0
* Created: 11/29/2012 04:51:02 PM
* Revision: 08/20/2014
* Compiler: gcc
*
* Author: Yuan Li (yli), yli@pacificbiosciences.com
* Company: Pacific Biosciences
*
* =====================================================================================
*/
#include <gtest/gtest.h>
#include <pbdata/testdata.h>
#include <alignment/files/CCSIterator.hpp>
#include <hdf/HDFRegionTableReader.hpp>
#include <pbdata/reads/RegionTable.hpp>
class CCSIteratorTestFixture : public testing::Test
{
public:
CCSIteratorTestFixture() {}
void SetUp()
{
fileName = baxFile2;
reader = new HDFRegionTableReader();
ccs = new CCSSequence();
rgn = new RegionTable();
int rev = reader->Initialize(fileName);
EXPECT_TRUE(rev);
reader->ReadTable(*rgn);
reader->Close();
}
void TearDown()
{
if (reader) delete reader;
if (ccs) delete ccs;
if (rgn) delete rgn;
}
~CCSIteratorTestFixture() {}
std::string fileName;
HDFRegionTableReader* reader;
CCSSequence* ccs;
RegionTable* rgn;
CCSIterator it;
};
TEST_F(CCSIteratorTestFixture, Initialize) {}
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