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#include <gtest/gtest.h>
#include <pbdata/testdata.h>
#include <hdf/HDFScanDataReader.hpp>
using namespace H5;
class HDFScanDataReaderTEST : public ::testing::Test
{
public:
virtual void SetUp()
{
fileName = scanDataFile1;
try {
hdfFile.openFile(fileName.c_str(), H5F_ACC_RDONLY);
ASSERT_EQ(rootGroup.Initialize(hdfFile, "/"), 1);
ASSERT_EQ(reader.Initialize(dynamic_cast<HDFGroup*>(&rootGroup)), 1);
} catch (H5::Exception& e) {
std::cerr << "Failed to open " << fileName << std::endl;
ASSERT_FALSE(true);
}
}
virtual void TearDown()
{
reader.Close();
hdfFile.close();
}
std::string fileName;
H5::H5File hdfFile;
HDFGroup rootGroup;
HDFScanDataReader reader;
};
TEST_F(HDFScanDataReaderTEST, ReadBindingKit)
{
std::string bindingKit;
EXPECT_EQ(reader.ReadBindingKit(bindingKit), 1);
EXPECT_EQ(bindingKit, "100356300");
// Test if bindkingKit can be read multiple times.
EXPECT_EQ(reader.ReadBindingKit(bindingKit), 1);
EXPECT_EQ(bindingKit, "100356300");
}
TEST_F(HDFScanDataReaderTEST, ReadSequencingKit)
{
std::string sequencingKit;
EXPECT_EQ(reader.ReadSequencingKit(sequencingKit), 1);
EXPECT_EQ(sequencingKit, "100356200");
// Test if sequencingKit can be read multiple times.
EXPECT_EQ(reader.ReadSequencingKit(sequencingKit), 1);
EXPECT_EQ(sequencingKit, "100356200");
}
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