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/* * ============================================================================
*
* Filename: testdata.h
*
* Description: List files used in unit tests.
*
* Version: 1.0
* Created: 08/22/2013 11:10:54 AM
* Revision: none
* Compiler: gcc
*
* Author: Yuan Li (yli), yli@pacificbiosciences.com
* Company: Pacific Biosciences
*
* ============================================================================
*/
#include <string>
const std::string baxFile1 =
("/pbi/dept/secondary/siv/testdata/BlasrTestData/ctest/data/"
"testLoadPulses/Analysis_Results/"
"m130302_011223_pd1_c000000092559900001500000112311511_s1_p0.1.bax.h5");
const std::string baxFile2 =
("/pbi/dept/secondary/siv/testdata/BlasrTestData/ctest/data/"
"testLoadPulses/Analysis_Results/"
"m130302_011223_pd1_c000000092559900001500000112311511_s1_p0.2.bax.h5");
const std::string baxFile3 =
("/pbi/dept/secondary/siv/testdata/BlasrTestData/utest/data/"
"test_read_chemistry_triple/"
"m150223_190837_42175_c100735112550000001823160806051530_s1_p0.1.bax.h5");
const std::string plsFile1 =
("/pbi/dept/secondary/siv/testdata/BlasrTestData/ctest/data/"
"testLoadPulses/Analysis_Results/"
"m121215_065521_richard_c100425710150000001823055001121371_s1_p0.pls.h5");
const std::string ccsFile1 =
("/pbi/dept/secondary/siv/testdata/BlasrTestData/utest/data/ccs_P4-C2/"
"m130328_211423_ethan_c100499512550000001823070408081371_s1_p0.ccs.h5");
const std::string fastaFile1 =
("/pbi/dept/secondary/siv/testdata/BlasrTestData/utest/"
"data/read.fasta");
const std::string fastqFile1 =
("/pbi/dept/secondary/siv/testdata/BlasrTestData/utest/data/ccs_P4-C2/"
"m130328_211423_ethan_c100499512550000001823070408081371_s1_p0.fastq");
const std::string titleTable1 =
("/pbi/dept/secondary/siv/testdata/BlasrTestData/utest/"
"data/titleTable1");
const std::string rgnFile1 =
("/pbi/dept/secondary/siv/testdata/BlasrTestData/utest/"
"data/test_regionTable.rgn.h5");
const std::string scanDataFile1 =
("/pbi/dept/secondary/siv/testdata/BlasrTestData/utest/"
"data/scandata.h5");
const std::string bamFile1 =
("/pbi/dept/secondary/siv/testdata/BlasrTestData/ctest/data/test_bam/"
"m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.1.subreads.bam");
const std::string xmlFile1 =
("/pbi/dept/secondary/siv/testdata/BlasrTestData/ctest/data/test_dataset/"
"chunking.subreadset.xml");
const std::string xmlFile2 =
("/pbi/dept/secondary/siv/testdata/BlasrTestData/ctest/data/test_dataset/"
"nofilter.subreadset.xml");
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