1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
|
// Author: Mark Chaisson
#ifndef _BLASR_ENUMERATIONS_HPP_
#define _BLASR_ENUMERATIONS_HPP_
enum class FileType
{
Fasta,
Fastq,
HDFPulse,
Fourbit,
HDFBase,
HDFCCS,
HDFCCSONLY,
PBBAM,
PBDATASET,
None
};
typedef enum T_Strand { Forward, Reverse } Strand;
typedef enum T_PlatformType { Astro = 1, Springfield = 2, Sequel = 4, NoPlatform } PlatformId;
typedef enum T_RegionType { Adapter, Insert, HQRegion, BarCode, UnknownRegionType } RegionType;
typedef enum T_PulseMetricType {
QualityValueMetric,
ClassifierQVMetric,
StartTimeMetric,
PulseWidthMetric,
WidthInFramesMetric,
pkmidMetric,
IPDMetric,
LightMetric,
PreBaseFramesMetric
} PulseMetricType;
typedef enum T_AlignMode {
NoAlignMode,
Fullread,
Subread,
CCSDeNovo,
CCSFullPass,
CCSAllPass,
ZmwSubreads
} AlignMode;
#endif
|
