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#ifndef _BLASR_GFF_FILE_HPP_
#define _BLASR_GFF_FILE_HPP_
#include <fstream>
#include <iostream>
#include <sstream>
#include <string>
#include <vector>
#include <pbdata/Types.h>
#include <pbdata/utils.hpp>
class GFFEntry
{
public:
std::string name, type, source;
UInt start, end;
char strand;
float score;
std::string frame;
std::string attributes;
GFFEntry(std::string& _name, std::string& _source, std::string& _type, UInt& _start, UInt& _end,
float& _score, char& _strand, std::string& _frame, std::string _attributes);
};
class GFFFile
{
public:
std::vector<GFFEntry> entries;
void ReadAll(std::string& gffFileName);
};
#endif
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