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/******************************************************************************
* Copyright (c) 2014, Hobu Inc., hobu.inc@gmail.com
*
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following
* conditions are met:
*
* * Redistributions of source code must retain the above copyright
* notice, this list of conditions and the following disclaimer.
* * Redistributions in binary form must reproduce the above copyright
* notice, this list of conditions and the following disclaimer in
* the documentation and/or other materials provided
* with the distribution.
* * Neither the name of Hobu, Inc. or Flaxen Geo Consulting nor the
* names of its contributors may be used to endorse or promote
* products derived from this software without specific prior
* written permission.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
* "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
* LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
* FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
* COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
* INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
* BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS
* OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED
* AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
* OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
* OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY
* OF SUCH DAMAGE.
****************************************************************************/
#include <pdal/pdal_features.hpp>
#include <pdal/GDALUtils.hpp>
#include <pdal/PDALUtils.hpp>
#include <pdal/compression/LazPerfCompression.hpp>
#include <pdal/util/FileUtils.hpp>
#include <pdal/util/ProgramArgs.hpp>
#include "OciReader.hpp"
namespace pdal
{
static PluginInfo const s_info
{
"readers.oci",
"Read point cloud data from Oracle SDO_POINTCLOUD.",
"http://pdal.io/stages/readers.oci.html"
};
CREATE_SHARED_STAGE(OciReader, s_info)
std::string OciReader::getName() const { return s_info.name; }
void OciReader::addArgs(ProgramArgs& args)
{
args.add("query", "SQL query to retrieve points", m_query).setPositional();
args.add("xml_schema_dump", "File to which schema should be written",
m_schemaFile);
args.add("connection", "Connection string", m_connSpec);
args.add("populate_pointsourceid", "Set point source ID",
m_updatePointSourceId);
}
void OciReader::initialize()
{
m_compression = false;
try
{
m_connection = connect(m_connSpec);
}
catch (const connection_failed& err)
{
throwError(err.what());
}
m_block = BlockPtr(new Block(m_connection));
gdal::registerDrivers();
if (m_query.empty())
throwError("'query' statement is empty. No data can be read.");
m_stmt = Statement(m_connection->CreateStatement(m_query.c_str()));
m_stmt->Execute(0);
validateQuery();
// Map the query to the block in which data is to be stored.
defineBlock(m_stmt, m_block);
// Fetch an initial row of data.
if (!m_stmt->Fetch())
throwError("Unable to fetch a point cloud entry entry.");
m_block->setFetched();
// If the spatial reference wasn't provided as an option, fetch it from
// the data source.
if (m_spatialRef.empty())
m_spatialRef = fetchSpatialReference(m_stmt, m_block);
setSpatialReference(m_spatialRef);
}
void OciReader::defineBlock(Statement stmt, BlockPtr block) const
{
int iCol = 0;
char szFieldName[OWNAME];
int hType = 0;
int nSize = 0;
int nPrecision = 0;
signed short nScale = 0;
char szTypeName[OWNAME];
while (stmt->GetNextField(iCol, szFieldName, &hType, &nSize,
&nPrecision, &nScale, szTypeName))
{
std::string typeName = Utils::toupper(szTypeName);
std::string fieldName = Utils::toupper(szFieldName);
if (hType == SQLT_NTY && (typeName == "SDO_PC"))
stmt->Define(&(block->pc));
else if (fieldName == "OBJ_ID")
stmt->Define(&(block->obj_id));
else if (fieldName == "BLK_ID")
stmt->Define(&(block->blk_id));
else if (fieldName == "BLK_EXTENT")
stmt->Define(&(block->blk_extent));
else if (fieldName == "BLK_DOMAIN")
stmt->Define(&(block->blk_domain));
else if (fieldName == "PCBLK_MIN_RES")
stmt->Define(&(block->pcblk_min_res));
else if (fieldName == "PCBLK_MAX_RES")
stmt->Define(&(block->pcblk_max_res));
else if (fieldName == "NUM_POINTS")
stmt->Define(&(block->num_points));
else if (fieldName == "NUM_UNSORTED_POINTS")
stmt->Define(&(block->num_unsorted_points));
else if (fieldName == "PT_SORT_DIM")
stmt->Define(&(block->pt_sort_dim));
else if (fieldName == "POINTS")
stmt->Define(&(block->locator));
iCol++;
}
}
// Throws an exception if a query is invalid.
void OciReader::validateQuery()
{
int col = 0;
char fieldName[OWNAME];
int hType = 0;
int size = 0;
int precision = 0;
signed short scale = 0;
char typeName[OWNAME];
bool typeCorrect = false;
// We must have all of these field names present to be considered block
// data.
std::set<std::string> reqFields;
reqFields.insert("OBJ_ID");
reqFields.insert("BLK_ID");
reqFields.insert("BLK_EXTENT");
reqFields.insert("BLK_DOMAIN");
reqFields.insert("PCBLK_MIN_RES");
reqFields.insert("PCBLK_MAX_RES");
reqFields.insert("NUM_POINTS");
reqFields.insert("NUM_UNSORTED_POINTS");
reqFields.insert("PT_SORT_DIM");
reqFields.insert("POINTS");
while (m_stmt->GetNextField(col, fieldName, &hType, &size,
&precision, &scale, typeName))
{
reqFields.erase(fieldName);
if (hType == SQLT_NTY)
{
if (strcmp(typeName,"SDO_PC") == 0)
typeCorrect = true;
}
col++;
}
if (!typeCorrect)
throwError("Select statement '" + m_query + "' does not fetch "
"a SDO_PC object.");
// If we found all the fields, the list of required fields will be empty.
// If not, throw an exception.
if (!reqFields.empty())
{
std::ostringstream oss;
oss << "Query returns a block but is missing reqired fields: ";
auto i = reqFields.begin();
while (i != reqFields.end())
{
oss << *i;
i++;
if (i != reqFields.end())
oss << ",";
}
throwError(oss.str());
}
}
pdal::SpatialReference OciReader::fetchSpatialReference(Statement stmt,
BlockPtr block) const
{
// Fetch the WKT for the SRID to set the coordinate system of this stage
int srid = stmt->GetInteger(&(block->pc->pc_geometry.sdo_srid));
if (srid)
{
std::ostringstream oss;
oss << "EPSG:" << srid;
return pdal::SpatialReference(oss.str());
}
return pdal::SpatialReference();
}
void OciReader::addDimensions(PointLayoutPtr layout)
{
log()->get(LogLevel::Debug) << "Fetching schema from SDO_PC object" <<
std::endl;
XMLSchema schema = fetchSchema(m_stmt, m_block);
loadSchema(layout, schema);
MetadataNode comp = schema.getMetadata().findChild("compression");
m_compression = (comp.value() == "lazperf");
if (m_schemaFile.size())
{
std::string pcSchema = schema.xml();
std::ostream *out = Utils::createFile(m_schemaFile);
out->write(pcSchema.c_str(), pcSchema.size());
FileUtils::closeFile(out);
}
}
point_count_t OciReader::read(PointViewPtr view, point_count_t count)
{
if (eof())
return 0;
point_count_t totalNumRead = 0;
while (totalNumRead < count)
{
if (m_block->numRemaining() == 0)
if (!readOci(m_stmt, m_block))
return totalNumRead;
PointId bufBegin = view->size();
point_count_t numRead = 0;
if (orientation() == Orientation::DimensionMajor)
numRead = readDimMajor(*view, m_block, count - totalNumRead);
else if (orientation() == Orientation::PointMajor)
numRead = readPointMajor(*view, m_block, count - totalNumRead);
PointId bufEnd = bufBegin + numRead;
totalNumRead += numRead;
}
return totalNumRead;
}
point_count_t OciReader::readDimMajor(PointView& view, BlockPtr block,
point_count_t numPts)
{
using namespace Dimension;
point_count_t numRemaining = block->numRemaining();
PointId startId = view.size();
point_count_t blockRemaining = numRemaining;
point_count_t numRead = 0;
DimTypeList dims = dbDimTypes();
for (auto di = dims.begin(); di != dims.end(); ++di)
{
PointId nextId = startId;
char *pos = seekDimMajor(*di, block);
blockRemaining = numRemaining;
numRead = 0;
while (numRead < numPts && blockRemaining > 0)
{
writeField(view, pos, *di, nextId);
pos += Dimension::size(di->m_type);
if (di->m_id == Id::PointSourceId && m_updatePointSourceId)
view.setField(Id::PointSourceId, nextId, block->obj_id);
if (m_cb && di == dims.rbegin().base() - 1)
m_cb(view, nextId);
nextId++;
numRead++;
blockRemaining--;
}
}
block->setNumRemaining(blockRemaining);
return numRead;
}
point_count_t OciReader::readPointMajor(PointView& view,
BlockPtr block, point_count_t numPts)
{
PointId nextId = view.size();
point_count_t numRead = 0;
if (m_compression)
{
#ifdef PDAL_HAVE_LAZPERF
auto cb = [this, &view, &nextId, &numRead](char *buf, size_t bufsize)
{
writePoint(view, nextId, buf);
if (m_cb)
m_cb(view, nextId);
nextId++;
numRead++;
};
const char *src = reinterpret_cast<const char *>(block->chunk.data());
size_t srcsize = block->chunk.size();
LazPerfDecompressor(cb, dbDimTypes(), block->numRemaining()).
decompress(src, srcsize);
#else
throwError("Can't decompress without LAZperf.");
#endif
}
else
{
char *pos = seekPointMajor(block);
size_t cnt = block->numRemaining();
while (numRead < numPts && cnt--)
{
writePoint(view, nextId, pos);
if (m_cb)
m_cb(view, nextId);
pos += packedPointSize();
nextId++;
numRead++;
}
}
block->setNumRemaining(block->numRemaining() - numRead);
return numRead;
}
char *OciReader::seekDimMajor(const DimType& d, BlockPtr block)
{
return block->data() +
(dimOffset(d.m_id) * block->numPoints()) +
(Dimension::size(d.m_type) * block->numRead());
}
char *OciReader::seekPointMajor(BlockPtr block)
{
return block->data() + (block->numRead() * packedPointSize());
}
// Read a block (set of points) from the database.
bool OciReader::readOci(Statement stmt, BlockPtr block)
{
if (!block->fetched())
{
if (!stmt->Fetch())
{
m_atEnd = true;
return false;
}
block->setFetched();
}
// Read the points from the blob in the row.
readBlob(stmt, block);
XMLSchema *s = findSchema(stmt, block);
updateSchema(*s);
MetadataNode comp = s->getMetadata().findChild("compression");
m_compression = (comp.value() == "lazperf");
block->reset();
block->clearFetched();
return true;
}
void OciReader::readBlob(Statement stmt, BlockPtr block)
{
uint32_t amountRead = 0;
uint32_t blobLength = stmt->GetBlobLength(block->locator);
if (block->chunk.size() < blobLength)
block->chunk.resize(blobLength);
if (!stmt->ReadBlob(block->locator, (void*)(block->chunk.data()),
block->chunk.size() , &amountRead))
throwError("Did not read all blob data.");
block->chunk.resize(amountRead);
}
// All of the schemas should be the same with regard to actual dimension
// name, order, etc, but each cloud may have its own scaling for X, Y and Z.
// Store it away so that it can be applied later if necessary.
// HOBU -- nope. Each Block/cloud combo could potentially have a different
// schema, with same names but different composition.
// ABELL -- the setup doesn't allow this. Dimensions and order is all stored
// when the first block is read. We don't have any facility for modifying
// dimensions as blocks are read. If this were to actually happen, things
// would break. Should we do something about it?
XMLSchema *OciReader::findSchema(Statement stmt, BlockPtr block)
{
int32_t cloudId = stmt->GetInteger(&block->pc->pc_id);
auto si = m_schemas.find(cloudId);
if (si == m_schemas.end())
{
XMLSchema s = fetchSchema(stmt, block);
auto i = m_schemas.insert(std::make_pair(cloudId, s));
si = i.first;
}
return &(si->second);
}
} // namespace pdal
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