File: AppService_services.py

package info (click to toggle)
pdb2pqr 1.8-1
  • links: PTS, VCS
  • area: main
  • in suites: wheezy
  • size: 8,576 kB
  • sloc: python: 24,897; sh: 12,005; cpp: 9,831; xml: 9,098; makefile: 355; ansic: 36
file content (545 lines) | stat: -rw-r--r-- 22,437 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
################################################## 
# ./AppService_services.py 
# generated by ZSI.wsdl2python 
# 
# 
##################################################


from AppService_services_types import *
from AppService_services_types import \
    nbcr_sdsc_edu_opal_types as ns1
import urlparse, types
from ZSI.TCcompound import Struct
from ZSI import client
import ZSI

class AppServiceInterface:
    def getAppServicePortType(self, portAddress=None, **kw):
        raise NonImplementationError, "method not implemented"


class AppServiceLocator(AppServiceInterface):
    AppServicePortType_address = "http://ws.nbcr.net:8080/axis-1.2.1/services/Pdb2pqrOpalService"
    def getAppServicePortTypeAddress(self):
        return AppServiceLocator.AppServicePortType_address

    def getAppServicePortType(self, portAddress=None, **kw):
        return AppServicePortSoapBindingSOAP(portAddress or AppServiceLocator.AppServicePortType_address, **kw)


class AppServicePortSoapBindingSOAP:

    def __init__(self, addr, **kw):
        netloc = (urlparse.urlparse(addr)[1]).split(":") + [80,]
        if not kw.has_key("host"):
            kw["host"] = netloc[0]
        if not kw.has_key("port"):
            kw["port"] = int(netloc[1])
        if not kw.has_key("url"):
            kw["url"] =  urlparse.urlparse(addr)[2]
        self.binding = client.Binding(**kw)


    def destroy(self, request):
        """
        @param: request is str

        @return: response from destroyResponse::
            _destroyOutput: ns1.StatusOutputType_Def
              _baseURL: str
              _code: int
              _message: str
        """

        if not isinstance(request, basestring):
            raise TypeError, "%s incorrect request type" %(request.__class__)
        kw = {'requestclass': destroyRequestWrapper}
        response = self.binding.Send(None, None, request, soapaction="http://nbcr.sdsc.edu/opal/destroy", **kw)
        response = self.binding.Receive(destroyResponseWrapper())

        if not isinstance(response, destroyResponse) and\
            not issubclass(destroyResponse, response.__class__):
            raise TypeError, "%s incorrect response type" %(response.__class__)
        return response


    def getAppConfig(self, request):
        """
        @param: request to getAppConfigRequest::
            _getAppConfigInput: ns1.AppConfigInputType_Def

        @return: response from getAppConfigResponse::
            _getAppConfigOutput: ns1.AppConfigType_Def
              _binaryLocation: str
              _defaultArgs: str, optional
              _metadata: ns1.AppMetadataType_Def
                _info: str, optional
                _types: ns1.ArgumentsType_Def, optional
                  _flags: ns1.FlagsArrayType_Def, optional
                    _flag: ns1.FlagsType_Def, optional
                      _id: str
                      _tag: str
                      _textDesc: str, optional
                  _implicitParams: ns1.ImplicitParamsArrayType_Def, optional
                    _param: ns1.ImplicitParamsType_Def, optional
                      _extension: str, optional
                      _id: str
                      _ioType: ns1.IOType_Def
                        _IOType: str, optional
                      _max: int, optional
                      _min: int, optional
                      _name: str, optional
                      _required: boolean, optional
                      _semanticType: str, optional
                      _textDesc: str, optional
                  _taggedParams: ns1.ParamsArrayType_Def, optional
                    _param: ns1.ParamsType_Def, optional
                      _id: str
                      _ioType: ns1.IOType_Def, optional
                      _paramType: ns1.ParamType_Def
                        _ParamType: str, optional
                      _required: boolean, optional
                      _semanticType: str, optional
                      _tag: str, optional
                      _textDesc: str, optional
                      _value: str, optional
                    _separator: str, optional
                  _untaggedParams: ns1.ParamsArrayType_Def, optional
                _usage: str
              _parallel: boolean
        """

        if not isinstance(request, getAppConfigRequest) and\
            not issubclass(getAppConfigRequest, request.__class__):
            raise TypeError, "%s incorrect request type" %(request.__class__)
        kw = {}
        response = self.binding.Send(None, None, request, soapaction="http://nbcr.sdsc.edu/opal/getAppConfig", **kw)
        response = self.binding.Receive(getAppConfigResponseWrapper())

        if not isinstance(response, getAppConfigResponse) and\
            not issubclass(getAppConfigResponse, response.__class__):
            raise TypeError, "%s incorrect response type" %(response.__class__)
        return response


    def getAppMetadata(self, request):
        """
        @param: request to getAppMetadataRequest::
            _getAppMetadataInput: ns1.AppMetadataInputType_Def

        @return: response from getAppMetadataResponse::
            _getAppMetadataOutput: ns1.AppMetadataType_Def
              _info: str, optional
              _types: ns1.ArgumentsType_Def, optional
                _flags: ns1.FlagsArrayType_Def, optional
                  _flag: ns1.FlagsType_Def, optional
                    _id: str
                    _tag: str
                    _textDesc: str, optional
                _implicitParams: ns1.ImplicitParamsArrayType_Def, optional
                  _param: ns1.ImplicitParamsType_Def, optional
                    _extension: str, optional
                    _id: str
                    _ioType: ns1.IOType_Def
                      _IOType: str, optional
                    _max: int, optional
                    _min: int, optional
                    _name: str, optional
                    _required: boolean, optional
                    _semanticType: str, optional
                    _textDesc: str, optional
                _taggedParams: ns1.ParamsArrayType_Def, optional
                  _param: ns1.ParamsType_Def, optional
                    _id: str
                    _ioType: ns1.IOType_Def, optional
                    _paramType: ns1.ParamType_Def
                      _ParamType: str, optional
                    _required: boolean, optional
                    _semanticType: str, optional
                    _tag: str, optional
                    _textDesc: str, optional
                    _value: str, optional
                  _separator: str, optional
                _untaggedParams: ns1.ParamsArrayType_Def, optional
              _usage: str
        """

        if not isinstance(request, getAppMetadataRequest) and\
            not issubclass(getAppMetadataRequest, request.__class__):
            raise TypeError, "%s incorrect request type" %(request.__class__)
        kw = {}
        response = self.binding.Send(None, None, request, soapaction="http://nbcr.sdsc.edu/opal/getAppMetadata", **kw)
        response = self.binding.Receive(getAppMetadataResponseWrapper())

        if not isinstance(response, getAppMetadataResponse) and\
            not issubclass(getAppMetadataResponse, response.__class__):
            raise TypeError, "%s incorrect response type" %(response.__class__)
        return response


    def getOutputAsBase64ByName(self, request):
        """
        @param: request to getOutputAsBase64ByNameRequest::
            _getOutputAsBase64ByNameInput: ns1.OutputsByNameInputType_Def
              _fileName: str
              _jobID: str

        @return: response from getOutputAsBase64ByNameResponse::
            _item: str, optional
        """

        if not isinstance(request, getOutputAsBase64ByNameRequest) and\
            not issubclass(getOutputAsBase64ByNameRequest, request.__class__):
            raise TypeError, "%s incorrect request type" %(request.__class__)
        kw = {}
        response = self.binding.Send(None, None, request, soapaction="http://nbcr.sdsc.edu/opal/getOutputAsBase64ByName", **kw)
        response = self.binding.Receive(getOutputAsBase64ByNameResponseWrapper())

        if not isinstance(response, getOutputAsBase64ByNameResponse) and\
            not issubclass(getOutputAsBase64ByNameResponse, response.__class__):
            raise TypeError, "%s incorrect response type" %(response.__class__)
        return response


    def getOutputs(self, request):
        """
        @param: request is str

        @return: response from getOutputsResponse::
            _getOutputsOutput: ns1.JobOutputType_Def
              _outputFile: ns1.OutputFileType_Def, optional
                _name: str
                _url: str
              _stdErr: str, optional
              _stdOut: str, optional
        """

        if not isinstance(request, basestring):
            raise TypeError, "%s incorrect request type" %(request.__class__)
        kw = {'requestclass': getOutputsRequestWrapper}
        response = self.binding.Send(None, None, request, soapaction="http://nbcr.sdsc.edu/opal/getOutputs", **kw)
        response = self.binding.Receive(getOutputsResponseWrapper())

        if not isinstance(response, getOutputsResponse) and\
            not issubclass(getOutputsResponse, response.__class__):
            raise TypeError, "%s incorrect response type" %(response.__class__)
        return response


    def launchJob(self, request):
        """
        @param: request to launchJobRequest::
            _launchJobInput: ns1.JobInputType_Def
              _argList: str, optional
              _inputFile: ns1.InputFileType_Def, optional
                _contents: str
                _name: str
              _numProcs: int, optional

        @return: response from launchJobResponse::
            _launchJobOutput: ns1.JobSubOutputType_Def
              _jobID: str
              _status: ns1.StatusOutputType_Def
                _baseURL: str
                _code: int
                _message: str
        """

        if not isinstance(request, launchJobRequest) and\
            not issubclass(launchJobRequest, request.__class__):
            raise TypeError, "%s incorrect request type" %(request.__class__)
        kw = {}
        response = self.binding.Send(None, None, request, soapaction="http://nbcr.sdsc.edu/opal/launchJob", **kw)
        response = self.binding.Receive(launchJobResponseWrapper())

        if not isinstance(response, launchJobResponse) and\
            not issubclass(launchJobResponse, response.__class__):
            raise TypeError, "%s incorrect response type" %(response.__class__)
        return response


    def launchJobBlocking(self, request):
        """
        @param: request to launchJobBlockingRequest::
            _launchJobBlockingInput: ns1.JobInputType_Def
              _argList: str, optional
              _inputFile: ns1.InputFileType_Def, optional
                _contents: str
                _name: str
              _numProcs: int, optional

        @return: response from launchJobBlockingResponse::
            _launchJobBlockingOutput: ns1.BlockingOutputType_Def
              _jobOut: ns1.JobOutputType_Def
                _outputFile: ns1.OutputFileType_Def, optional
                  _name: str
                  _url: str
                _stdErr: str, optional
                _stdOut: str, optional
              _status: ns1.StatusOutputType_Def
                _baseURL: str
                _code: int
                _message: str
        """

        if not isinstance(request, launchJobBlockingRequest) and\
            not issubclass(launchJobBlockingRequest, request.__class__):
            raise TypeError, "%s incorrect request type" %(request.__class__)
        kw = {}
        response = self.binding.Send(None, None, request, soapaction="http://nbcr.sdsc.edu/opal/launchJobBlocking", **kw)
        response = self.binding.Receive(launchJobBlockingResponseWrapper())

        if not isinstance(response, launchJobBlockingResponse) and\
            not issubclass(launchJobBlockingResponse, response.__class__):
            raise TypeError, "%s incorrect response type" %(response.__class__)
        return response


    def queryStatus(self, request):
        """
        @param: request is str

        @return: response from queryStatusResponse::
            _queryStatusOutput: ns1.StatusOutputType_Def
              _baseURL: str
              _code: int
              _message: str
        """

        if not isinstance(request, basestring):
            raise TypeError, "%s incorrect request type" %(request.__class__)
        kw = {'requestclass': queryStatusRequestWrapper}
        response = self.binding.Send(None, None, request, soapaction="http://nbcr.sdsc.edu/opal/queryStatus", **kw)
        response = self.binding.Receive(queryStatusResponseWrapper())

        if not isinstance(response, queryStatusResponse) and\
            not issubclass(queryStatusResponse, response.__class__):
            raise TypeError, "%s incorrect response type" %(response.__class__)
        return response



class destroyRequest(ns1.destroyInput_Dec): 
    if not hasattr( ns1.destroyInput_Dec(), "typecode" ):
        typecode = ns1.destroyInput_Dec()

    def __init__(self, name=None, ns=None):
        ns1.destroyInput_Dec.__init__(self, name=None, ns=None)

class destroyRequestWrapper(destroyRequest):
    """wrapper for document:literal message"""

    typecode = destroyRequest( name=None, ns=None ).typecode
    def __init__( self, name=None, ns=None, **kw ):
        destroyRequest.__init__( self, name=None, ns=None )

class destroyResponse(ns1.destroyOutput_Dec): 
    if not hasattr( ns1.destroyOutput_Dec(), "typecode" ):
        typecode = ns1.destroyOutput_Dec()

    def __init__(self, name=None, ns=None):
        ns1.destroyOutput_Dec.__init__(self, name=None, ns=None)

class destroyResponseWrapper(destroyResponse):
    """wrapper for document:literal message"""

    typecode = destroyResponse( name=None, ns=None ).typecode
    def __init__( self, name=None, ns=None, **kw ):
        destroyResponse.__init__( self, name=None, ns=None )

class getAppConfigRequest(ns1.getAppConfigInput_Dec): 
    if not hasattr( ns1.getAppConfigInput_Dec(), "typecode" ):
        typecode = ns1.getAppConfigInput_Dec()

    def __init__(self, name=None, ns=None):
        ns1.getAppConfigInput_Dec.__init__(self, name=None, ns=None)

class getAppConfigRequestWrapper(getAppConfigRequest):
    """wrapper for document:literal message"""

    typecode = getAppConfigRequest( name=None, ns=None ).typecode
    def __init__( self, name=None, ns=None, **kw ):
        getAppConfigRequest.__init__( self, name=None, ns=None )

class getAppConfigResponse(ns1.getAppConfigOutput_Dec): 
    if not hasattr( ns1.getAppConfigOutput_Dec(), "typecode" ):
        typecode = ns1.getAppConfigOutput_Dec()

    def __init__(self, name=None, ns=None):
        ns1.getAppConfigOutput_Dec.__init__(self, name=None, ns=None)

class getAppConfigResponseWrapper(getAppConfigResponse):
    """wrapper for document:literal message"""

    typecode = getAppConfigResponse( name=None, ns=None ).typecode
    def __init__( self, name=None, ns=None, **kw ):
        getAppConfigResponse.__init__( self, name=None, ns=None )

class getAppMetadataRequest(ns1.getAppMetadataInput_Dec): 
    if not hasattr( ns1.getAppMetadataInput_Dec(), "typecode" ):
        typecode = ns1.getAppMetadataInput_Dec()

    def __init__(self, name=None, ns=None):
        ns1.getAppMetadataInput_Dec.__init__(self, name=None, ns=None)

class getAppMetadataRequestWrapper(getAppMetadataRequest):
    """wrapper for document:literal message"""

    typecode = getAppMetadataRequest( name=None, ns=None ).typecode
    def __init__( self, name=None, ns=None, **kw ):
        getAppMetadataRequest.__init__( self, name=None, ns=None )

class getAppMetadataResponse(ns1.getAppMetadataOutput_Dec): 
    if not hasattr( ns1.getAppMetadataOutput_Dec(), "typecode" ):
        typecode = ns1.getAppMetadataOutput_Dec()

    def __init__(self, name=None, ns=None):
        ns1.getAppMetadataOutput_Dec.__init__(self, name=None, ns=None)

class getAppMetadataResponseWrapper(getAppMetadataResponse):
    """wrapper for document:literal message"""

    typecode = getAppMetadataResponse( name=None, ns=None ).typecode
    def __init__( self, name=None, ns=None, **kw ):
        getAppMetadataResponse.__init__( self, name=None, ns=None )

class getOutputAsBase64ByNameRequest(ns1.getOutputAsBase64ByNameInput_Dec): 
    if not hasattr( ns1.getOutputAsBase64ByNameInput_Dec(), "typecode" ):
        typecode = ns1.getOutputAsBase64ByNameInput_Dec()

    def __init__(self, name=None, ns=None):
        ns1.getOutputAsBase64ByNameInput_Dec.__init__(self, name=None, ns=None)

class getOutputAsBase64ByNameRequestWrapper(getOutputAsBase64ByNameRequest):
    """wrapper for document:literal message"""

    typecode = getOutputAsBase64ByNameRequest( name=None, ns=None ).typecode
    def __init__( self, name=None, ns=None, **kw ):
        getOutputAsBase64ByNameRequest.__init__( self, name=None, ns=None )

class getOutputAsBase64ByNameResponse(ns1.getOutputAsBase64ByNameOutput_Dec): 
    if not hasattr( ns1.getOutputAsBase64ByNameOutput_Dec(), "typecode" ):
        typecode = ns1.getOutputAsBase64ByNameOutput_Dec()

    def __init__(self, name=None, ns=None):
        ns1.getOutputAsBase64ByNameOutput_Dec.__init__(self, name=None, ns=None)

class getOutputAsBase64ByNameResponseWrapper(getOutputAsBase64ByNameResponse):
    """wrapper for document:literal message"""

    typecode = getOutputAsBase64ByNameResponse( name=None, ns=None ).typecode
    def __init__( self, name=None, ns=None, **kw ):
        getOutputAsBase64ByNameResponse.__init__( self, name=None, ns=None )

class getOutputsRequest(ns1.getOutputsInput_Dec): 
    if not hasattr( ns1.getOutputsInput_Dec(), "typecode" ):
        typecode = ns1.getOutputsInput_Dec()

    def __init__(self, name=None, ns=None):
        ns1.getOutputsInput_Dec.__init__(self, name=None, ns=None)

class getOutputsRequestWrapper(getOutputsRequest):
    """wrapper for document:literal message"""

    typecode = getOutputsRequest( name=None, ns=None ).typecode
    def __init__( self, name=None, ns=None, **kw ):
        getOutputsRequest.__init__( self, name=None, ns=None )

class getOutputsResponse(ns1.getOutputsOutput_Dec): 
    if not hasattr( ns1.getOutputsOutput_Dec(), "typecode" ):
        typecode = ns1.getOutputsOutput_Dec()

    def __init__(self, name=None, ns=None):
        ns1.getOutputsOutput_Dec.__init__(self, name=None, ns=None)

class getOutputsResponseWrapper(getOutputsResponse):
    """wrapper for document:literal message"""

    typecode = getOutputsResponse( name=None, ns=None ).typecode
    def __init__( self, name=None, ns=None, **kw ):
        getOutputsResponse.__init__( self, name=None, ns=None )

class launchJobBlockingRequest(ns1.launchJobBlockingInput_Dec): 
    if not hasattr( ns1.launchJobBlockingInput_Dec(), "typecode" ):
        typecode = ns1.launchJobBlockingInput_Dec()

    def __init__(self, name=None, ns=None):
        ns1.launchJobBlockingInput_Dec.__init__(self, name=None, ns=None)

class launchJobBlockingRequestWrapper(launchJobBlockingRequest):
    """wrapper for document:literal message"""

    typecode = launchJobBlockingRequest( name=None, ns=None ).typecode
    def __init__( self, name=None, ns=None, **kw ):
        launchJobBlockingRequest.__init__( self, name=None, ns=None )

class launchJobBlockingResponse(ns1.launchJobBlockingOutput_Dec): 
    if not hasattr( ns1.launchJobBlockingOutput_Dec(), "typecode" ):
        typecode = ns1.launchJobBlockingOutput_Dec()

    def __init__(self, name=None, ns=None):
        ns1.launchJobBlockingOutput_Dec.__init__(self, name=None, ns=None)

class launchJobBlockingResponseWrapper(launchJobBlockingResponse):
    """wrapper for document:literal message"""

    typecode = launchJobBlockingResponse( name=None, ns=None ).typecode
    def __init__( self, name=None, ns=None, **kw ):
        launchJobBlockingResponse.__init__( self, name=None, ns=None )

class launchJobRequest(ns1.launchJobInput_Dec): 
    if not hasattr( ns1.launchJobInput_Dec(), "typecode" ):
        typecode = ns1.launchJobInput_Dec()

    def __init__(self, name=None, ns=None):
        ns1.launchJobInput_Dec.__init__(self, name=None, ns=None)

class launchJobRequestWrapper(launchJobRequest):
    """wrapper for document:literal message"""

    typecode = launchJobRequest( name=None, ns=None ).typecode
    def __init__( self, name=None, ns=None, **kw ):
        launchJobRequest.__init__( self, name=None, ns=None )

class launchJobResponse(ns1.launchJobOutput_Dec): 
    if not hasattr( ns1.launchJobOutput_Dec(), "typecode" ):
        typecode = ns1.launchJobOutput_Dec()

    def __init__(self, name=None, ns=None):
        ns1.launchJobOutput_Dec.__init__(self, name=None, ns=None)

class launchJobResponseWrapper(launchJobResponse):
    """wrapper for document:literal message"""

    typecode = launchJobResponse( name=None, ns=None ).typecode
    def __init__( self, name=None, ns=None, **kw ):
        launchJobResponse.__init__( self, name=None, ns=None )

class queryStatusRequest(ns1.queryStatusInput_Dec): 
    if not hasattr( ns1.queryStatusInput_Dec(), "typecode" ):
        typecode = ns1.queryStatusInput_Dec()

    def __init__(self, name=None, ns=None):
        ns1.queryStatusInput_Dec.__init__(self, name=None, ns=None)

class queryStatusRequestWrapper(queryStatusRequest):
    """wrapper for document:literal message"""

    typecode = queryStatusRequest( name=None, ns=None ).typecode
    def __init__( self, name=None, ns=None, **kw ):
        queryStatusRequest.__init__( self, name=None, ns=None )

class queryStatusResponse(ns1.queryStatusOutput_Dec): 
    if not hasattr( ns1.queryStatusOutput_Dec(), "typecode" ):
        typecode = ns1.queryStatusOutput_Dec()

    def __init__(self, name=None, ns=None):
        ns1.queryStatusOutput_Dec.__init__(self, name=None, ns=None)

class queryStatusResponseWrapper(queryStatusResponse):
    """wrapper for document:literal message"""

    typecode = queryStatusResponse( name=None, ns=None ).typecode
    def __init__( self, name=None, ns=None, **kw ):
        queryStatusResponse.__init__( self, name=None, ns=None )