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#!@WHICHPYTHON@
"""
Displays the Jmol input page
"""
print 'Content-type: text/html\n\n'
__date__ = "18 June 2008"
__author__ = "Samir Unni"
__version__ = "0.0.1"
from src.aconf import *
import cgi, cgitb, pickle, urllib, os, glob
from src.utilities import getEventTrackingString, getTrackingScriptString
cgitb.enable()
form = cgi.FieldStorage()
def initVars():
#global serviceURL
if not form.has_key("jobid"):
pass # add code to redirect to PDB2PQR input page here
else:
jobid = form['jobid'].value
#aspFile = open('./tmp/%s/%s-asp' % (logTime, logTime))
#appServicePort = pickle.load(aspFile)
#aspFile.close()
#jobInfoFile = open('./tmp/%s/%s-jobinfo' % (logTime, logTime))
#jobID = jobInfoFile.read()
#jobInfoFile.close()
aoFile = open('%s%s%s/%s-ao' % (INSTALLDIR, TMPDIR, jobid, jobid))
apbsOptions = pickle.load(aoFile)
aoFile.close()
if APBS_OPAL_URL!="":
from AppService_client import AppServiceLocator, getOutputsRequest
apbsOpalJobIDFile = open('%s%s%s/apbs_opal_job_id' % (INSTALLDIR, TMPDIR, jobid))
apbsOpalJobID = apbsOpalJobIDFile.read()
apbsOpalJobIDFile.close()
appLocator = AppServiceLocator()
resp = appLocator.getAppServicePort(APBS_OPAL_URL).getOutputs(getOutputsRequest(apbsOpalJobID))
if not os.access('%s%s%s' % (INSTALLDIR, TMPDIR, jobid), os.F_OK):
os.mkdir('%s%s%s' % (INSTALLDIR, TMPDIR, jobid))
for file in resp._outputFile:
fileName = file._name
if fileName!="Standard Output" and fileName!="Standard Error":
urllib.urlretrieve(file._url, '%s%s%s/%s' % (INSTALLDIR, TMPDIR, jobid, fileName))
return apbsOptions
def main(apbsOptions):
cgiFile = "jmol.cgi"
cgiName = "thisform"
defaultVisType = "jmol"
checkJmolType = True
cssFile = 'pdb2pqr.css'
jobid = form['jobid'].value
string = """
<!DOCTYPE html>
<head>
{trackingscript}
<script type="text/javascript">
{trackingevents}
</script>
<title>Visualization</title>
<link rel="stylesheet" href="3dmol/css/pdb2pqr_3dmol.css" type="text/css">
<link rel="stylesheet" href="3dmol/css/foundation.css">
<link rel="stylesheet" type="text/css" href="3dmol/css/pure-min.css" media="screen" />
<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script>
<script src="http://3dmol.csb.pitt.edu/build/3Dmol.js"></script>
<script type="text/JavaScript" src="3dmol/js/visualize_html.js"></script>
<script type="text/JavaScript" src="3dmol/js/3dmol.js"></script>
</head>
<body>
<script type="text/javascript">build_page({jobid})</script>
<script type="text/javascript">getpqr({jobid})</script>
</body>
</html>""".format(jobid=jobid,
trackingevents=getEventTrackingString(category='apbs',
action='visualize',
label=str(os.environ["REMOTE_ADDR"])),
trackingscript=getTrackingScriptString(jobid=jobid))
print string
main(initVars())
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