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#include "ParseReadsOpts.h"
CParseReadsOpts::CParseReadsOpts(void)
{
this->setDefaults();
}
CParseReadsOpts::~CParseReadsOpts(void)
{
}
void CParseReadsOpts::setDefaults(void)
{
strcpy(this->readsFile, "");
strcpy(this->qualityFile, "");
// Reads files
this->cFileFormatSymbol = 'N';
this->truncatedReadLength = MAX_LINE;
this->bDiscardReadWithN = true;
this->allowedNumOfNinRead = 0;
this->bMappedLongRead = false;
this->bOddReadLengthAndLongRead = false;
this->bMappedSOLiDRead = false;
}
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