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#include "stdafx.h"
#include "ReadsMappingFlags.h"
CReadsMappingFlags::CReadsMappingFlags(void)
{
this->set_Default_Opt();
}
CReadsMappingFlags::~CReadsMappingFlags(void)
{
}
int CReadsMappingFlags::set_Default_Opt(void)
{
// OUTPUT
// Default is print all the 'best' alignments with the fewest substitutions.
this->bSearchAllAlignment = false;
this->bPrintUnMappedReads = false;
this->bPrintGeneName = true;
this->bPrintAlignment = true;
this->cOutputFormat = 'm';
// PREPROCESSING
this->bSaveTable = false;
return(0);
}
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