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#ifndef SEED_OPTIONS
#define SEED_OPTIONS
const unsigned int FULL_SENSITIVE_OPT_TO_TWO_BASE_MIS = 20;
const unsigned int FULL_SENSITIVE_OPT_TO_ONE_BASE_ONE_COLOR_MIS = 11;
const unsigned int FULL_SENSITIVE_OPT_TO_ONE_BASE_TWO_COLOR_MIS = 12;
const unsigned int MAX_FULL_SENSITIVITY_OPT = 4; // used when allowing more mismatch with partial sensitivity, for higher mismatch threshold.
const unsigned int DEFAULT_SEED_OPTION = 3; // used when allowing more mismatch with partial sensitivity, for higher mismatch threshold.
#include <string>
using namespace std;
inline string seedSymbol(unsigned seedId)
{
switch (seedId) {
case 0:
return(string("F0"));
case 1:
return(string("F1"));
case 2:
return(string("F2"));
case 11:
return(string("S11"));
case 12:
return(string("S12"));
case 3:
return(string("F3"));
case 20:
return(string("S20"));
case 4:
return(string("F4"));
default:
LOG_INFO("\nInfo %d: Unknown seed opts.\n", INFO_LOG);
return(string(""));
}
}
#endif
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