File: Dockerfile

package info (click to toggle)
persalys 13.1.1%2Bds-1
  • links: PTS, VCS
  • area: main
  • in suites: bookworm
  • size: 71,916 kB
  • sloc: xml: 496,859; cpp: 53,848; python: 3,435; sh: 332; makefile: 131; ansic: 14
file content (181 lines) | stat: -rw-r--r-- 14,498 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
FROM centos:7
MAINTAINER jschueller

# utils
RUN yum -y install epel-release centos-release-scl \
 && yum -y install wget git patch zip unzip bzip2 bsdtar perl subversion gettext autoconf automake libtool sudo bison flex make which file \
  pcre-devel pcre2-devel blas-devel lapack-devel atlas-devel libxml2-devel libmpc-devel mpfr-devel \
  zlib-devel bzip2-devel ncurses-devel sqlite-devel readline-devel tk-devel gdbm-devel db4-devel libpcap-devel gpg libffi-devel openssl-devel \
  libX11-devel libXt-devel libXext-devel libXrender-devel gtk2-devel dbus-devel libSM-devel libICE-devel libXrandr-devel \
  xorg-x11-server-Xvfb mesa-libGL-devel mesa-libEGL-devel mesa-libGLU-devel mesa-libGLw-devel mesa-dri-drivers libxkbcommon-x11-devel \
  freetype-devel libjpeg-turbo-devel fontconfig-devel xz-devel \
  xcb-util-devel xcb-util-renderutil-devel xcb-util-keysyms-devel xcb-util-image-devel xcb-util-wm-devel xorg-x11-util-macros \
  java-1.8.0-openjdk expat-devel lpsolve-devel libuuid-devel curl-devel \
  texlive-collection-latexrecommended texlive-pdftex texlive-latex-bin tex-preview pandoc dvisvgm \
  devtoolset-8-gcc devtoolset-8-gcc-c++ devtoolset-8-gcc-gfortran devtoolset-8-binutils cmake3 \
 && ln -s /usr/bin/cmake3 /usr/bin/cmake && ln -s /usr/bin/ctest3 /usr/bin/ctest \
 && sed -i "s|override_install_langs|#override_install_langs|g" /etc/yum.conf && yum -y reinstall glibc-common && localedef -i en_US -f UTF-8 C.UTF-8 \
 && mkdir -p /usr/share/texlive/texmf-local/tex/latex/ && cd /usr/share/texlive/texmf-local/tex/latex \
 && curl -fsSL http://mirrors.ctan.org/macros/latex/contrib/anyfontsize.zip | bsdtar -xf- && mktexlsr

ENV LANG="en_US.UTF-8" MAKEFLAGS="-j8"
ENV PATH=/opt/rh/devtoolset-8/root/usr/bin:$PATH LD_LIBRARY_PATH=/opt/rh/devtoolset-8/root/usr/lib64:/opt/rh/devtoolset-8/root/usr/lib
WORKDIR /usr/local/src

# swig
RUN curl -fSsL https://github.com/swig/swig/archive/v4.1.0.tar.gz | tar xz && cd swig-4.1.0 \
 && ./autogen.sh && ./configure --without-alllang && make > /dev/null 2>&1 && make install > /dev/null 2>&1 && swig -version && cd - && rm -r swig*

# ipopt
RUN curl -fsSL https://bitbucket.org/petsc/pkg-metis/get/v5.1.0-p10.tar.bz2 | tar xj && cd petsc-pkg-metis-* && make config shared=1 > /dev/null 2>&1 && make install > /dev/null 2>&1 && cd - && rm -r petsc*
RUN curl -fsSL https://github.com/coin-or-tools/ThirdParty-Mumps/archive/releases/1.6.2.tar.gz | tar xz && cd ThirdParty-Mumps-releases-1.6.2 && ./get.Mumps && ./configure --prefix=/usr/local && make > /dev/null 2>&1 && make install > /dev/null 2>&1 && cd - && rm -r ThirdParty*
RUN curl -fsSL https://github.com/coin-or/Ipopt/archive/releases/3.14.10.tar.gz | tar xz && cd Ipopt-releases-3.14.10 && ./configure --prefix=/usr/local --without-hsl --disable-java && make > /dev/null 2>&1 && make install > /dev/null 2>&1 && cd - && rm -r Ipopt*

# bonmin
RUN curl -fsSL https://www.coin-or.org/download/source/Bonmin/Bonmin-1.8.8.tgz | tar xz && cd Bonmin-1.8.8 && ./configure --prefix=/usr/local --with-ipopt-lib="$(pkg-config --libs ipopt)" --with-ipopt-incdir="/usr/local/include/coin-or/" && make > /dev/null 2>&1 && make install > /dev/null 2>&1 && cd - && rm -r Bonmin*

# dlib
RUN curl -L https://github.com/davisking/dlib/archive/v19.24.tar.gz | tar xz && cd dlib-19.24 \
 && mkdir build && cd build && cmake -DBUILD_SHARED_LIBS=ON -DCMAKE_BUILD_TYPE=Release .. && make install > /dev/null 2>&1 && cd - && rm -r dlib*

# cminpack
RUN curl -fsSL https://github.com/devernay/cminpack/archive/v1.3.8.tar.gz | tar xz && cd cminpack-1.3.8 \
 && cmake -DCMINPACK_LIB_INSTALL_DIR=lib -DBUILD_SHARED_LIBS=ON -DBUILD_EXAMPLES=OFF -DCMINPACK_PRECISION=d . && make install > /dev/null 2>&1 && cd - && rm -r cminpack*

# nlopt
RUN curl -fSsL https://github.com/stevengj/nlopt/archive/v2.7.1.tar.gz | tar xz && cd nlopt-2.7.1 \
 && cmake -DCMAKE_INSTALL_LIBDIR=lib -DBUILD_SHARED_LIBS=ON -DNLOPT_PYTHON=OFF -DNLOPT_OCTAVE=OFF -DNLOPT_GUILE=OFF -DNLOPT_MATLAB=OFF . && make install > /dev/null 2>&1 && cd - && rm -r nlopt*

# hdf5
RUN curl -fsSL https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/hdf5-1.12.2/src/hdf5-1.12.2.tar.bz2 | tar xj && cd hdf5-1.12.2 && ./configure --enable-cxx --prefix=/usr/local --disable-tests --disable-tools && make > /dev/null 2>&1 && make install > /dev/null 2>&1 && cd - && rm -r hdf5*

# eigen
RUN curl -fsSL https://gitlab.com/libeigen/eigen/-/archive/3.4.0/eigen-3.4.0.tar.bz2 | tar xj && cd eigen-3.4.0 \
 && mkdir build && cd build && cmake .. && make install > /dev/null 2>&1 && cd - && rm -r eigen*

# spectra
RUN curl -fsSL https://github.com/yixuan/spectra/archive/v1.0.1.tar.gz | tar xz && cd spectra-1.0.1 && cmake . && make install > /dev/null 2>&1 && cd - && rm -r spectra*

# glog
RUN curl -fsSL https://github.com/google/glog/archive/v0.6.0.tar.gz | tar xz && cd glog-0.6.0 && cmake . && make install > /dev/null 2>&1 && cd - && rm -rf glog*

# ceres
RUN curl -fsSL https://github.com/ceres-solver/ceres-solver/archive/2.1.0.tar.gz | tar xz && cd ceres-solver-2.1.0 \
 && cmake -DCMAKE_INSTALL_LIBDIR=lib -DBUILD_SHARED_LIBS=ON -DGFLAGS=OFF . && make install > /dev/null 2>&1 && cd - && rm -r ceres*

# tbb
RUN curl -fSsL https://github.com/oneapi-src/oneTBB/archive/refs/tags/v2021.7.0.tar.gz | tar xz && cd oneTBB-2021.7.0 && cmake -DTBB_TEST=OFF . && make install > /dev/null 2>&1 && cd - && rm -r oneTBB*

# primesieve
RUN curl -fsSL https://github.com/kimwalisch/primesieve/archive/v8.0.tar.gz | tar xz && cd primesieve-8.0 && cmake -DBUILD_STATIC_LIBS=OFF -DWITH_MULTIARCH=OFF . && make install > /dev/null 2>&1 && cd - && rm -r primesieve*

# appimagetool
RUN wget -q https://github.com/AppImage/AppImageKit/releases/download/13/appimagetool-x86_64.AppImage \
 && chmod a+rx appimagetool-x86_64.AppImage \
 && ./appimagetool-x86_64.AppImage --appimage-extract \
 && chmod -R a+rx squashfs-root \
 && ln -s /usr/local/src/squashfs-root/AppRun /usr/bin/appimagetool \
 && appimagetool --version

# openssl
RUN curl -fSsL https://www.openssl.org/source/openssl-1.1.1s.tar.gz | tar xz && cd openssl-1.1.1s \
 && ./config no-ssl2 no-shared -fPIC --prefix=/opt/ssl && make depend > /dev/null 2>&1 && make > /dev/null 2>&1 && make install_sw > /dev/null 2>&1

# python
RUN curl -fSsL https://www.python.org/ftp/python/3.10.8/Python-3.10.8.tgz | tar xz && cd Python-3.10.8 \
 && ./configure --enable-shared CFLAGS="-I/opt/ssl/include" LDFLAGS="-Wl,-rpath /usr/local/lib -L/opt/ssl/lib" && make > /dev/null 2>&1 && make install > /dev/null 2>&1 \
 && python3 -V && python3 -c "import ssl" && cd - && rm -r Python*

# pip
RUN curl -fsSLO https://bootstrap.pypa.io/get-pip.py && python3 get-pip.py && pip install -U pip wheel "setuptools<65.6" cython pybind11 flake8
RUN git clone -b v1.22.4 --depth 1 --recursive https://github.com/numpy/numpy.git && cd numpy \
 && python3 setup.py build ${MAKEFLAGS} > /dev/null 2>&1 && python3 setup.py install > /dev/null 2>&1 && cd - && python3 -c "import numpy" && cd - && rm -r numpy*
RUN pip install -U pythran && curl -fSsL https://pypi.python.org/packages/source/s/scipy/scipy-1.8.1.tar.gz | tar xz && cd scipy-1.8.1 \
 && python3 setup.py build ${MAKEFLAGS} > /dev/null 2>&1 && python3 setup.py install > /dev/null 2>&1 && cd - && python3 -c "import scipy.linalg" && cd - && rm -r scipy*
RUN pip install lxml pandas matplotlib ipython sphinx numpydoc dill --upgrade

# sundials
RUN curl -fSsL https://github.com/LLNL/sundials/archive/v5.8.0.tar.gz | tar xz && cd sundials-5.8.0 \
 && mkdir build && cd build && cmake -DCMAKE_BUILD_TYPE=Release -DBUILD_SHARED_LIBS=ON -DBUILD_STATIC_LIBS=OFF -DEXAMPLES_INSTALL=OFF \
    -DENABLE_LAPACK=ON -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DSUNDIALS_INDEX_SIZE=32 -DCMAKE_INSTALL_LIBDIR=lib .. \
 && make install > /dev/null 2>&1 && cd ../.. && rm -r sundials*

# fmilib
RUN curl -fSsL https://github.com/modelon-community/fmi-library/archive/2.4.1.tar.gz | tar xz && cd fmi-library-2.4.1 \
 && cd build && cmake -DFMILIB_INSTALL_PREFIX=/usr/local .. && make install > /dev/null 2>&1 && cd ../.. && rm -r fmi*

# assimulo
RUN curl -fSsL https://github.com/modelon-community/Assimulo/archive/Assimulo-3.3.tar.gz | tar xz && cd Assimulo-Assimulo-3.3 \
 && python3 setup.py install --extra-fortran-link-flags="-shared" --sundials-home=/usr/local --lapack-home=/usr/lib64 --blas-home=/usr/lib64 > /dev/null 2>&1 \
 && cd - && python3 -c "import assimulo; import assimulo.solvers" && rm -r Assimulo*

# pyfmi
RUN curl -fSsL https://github.com/modelon-community/PyFMI/archive/PyFMI-2.9.8.tar.gz | tar xz && cd PyFMI-PyFMI-2.9.8 \
 && python3 setup.py install --fmil-home=/usr/local > /dev/null 2>&1 && cd - && python3 -c "import pyfmi" && rm -r PyFMI*

# boost
RUN curl -fSsL https://boostorg.jfrog.io/artifactory/main/release/1.80.0/source/boost_1_80_0.tar.bz2 | tar xj && cd boost_1_80_0 \
 && ./bootstrap.sh --with-toolset=gcc --with-icu --with-python=/usr/local/bin/python3 \
 && ./b2 -q variant=release address-model=64 architecture=x86 debug-symbols=off threading=multi runtime-link=shared link=shared toolset=gcc --layout=system ${MAKEFLAGS} install --with-locale --with-filesystem --with-serialization > /dev/null 2>&1 && cd - && rm -r boost*

# pagmo
RUN curl -fsSL https://github.com/esa/pagmo2/archive/refs/tags/v2.18.0.tar.gz | tar xz && cd pagmo2-2.18.0 && cmake -DPAGMO_WITH_EIGEN3=ON . && make install > /dev/null 2>&1 && cd - && rm -r pagmo*

# ninja
RUN curl -fSsL https://github.com/ninja-build/ninja/archive/refs/tags/v1.11.1.tar.gz | tar xz && cd ninja-1.11.1 && cmake -DCMAKE_BUILD_TYPE=Release . && make install > /dev/null 2>&1

# wayland
RUN pip install meson && curl -fSsL https://gitlab.freedesktop.org/wayland/wayland/-/releases/1.21.0/downloads/wayland-1.21.0.tar.xz | tar xJ && cd wayland-1.21.0 && meson build --buildtype=release -Ddocumentation=false && ninja -C build install > /dev/null 2>&1 && cd - && rm -r wayland*

# qt
RUN curl -fSsL https://download.qt.io/official_releases/qt/5.15/5.15.7/submodules/qtbase-everywhere-opensource-src-5.15.7.tar.xz | tar xJ && cd qtbase-everywhere-src-5.15.7 && ./configure -xcb -no-mimetype-database -confirm-license -opensource -prefix /usr/local -headerdir /usr/local/include/qt -archdatadir /usr/local/lib/qt -datadir /usr/local/share/qt -silent -nomake tests -nomake examples && make > /dev/null 2>&1 && make install > /dev/null 2>&1 && cd - && rm -r qtbase*
RUN curl -fSsL https://download.qt.io/official_releases/qt/5.15/5.15.7/submodules/qtsvg-everywhere-opensource-src-5.15.7.tar.xz | tar xJ && cd qtsvg-everywhere-src-5.15.7 && qmake && make > /dev/null 2>&1 && make install > /dev/null 2>&1 && cd - && rm -r qtsvg*
RUN curl -fSsL https://download.qt.io/official_releases/qt/5.15/5.15.7/submodules/qtx11extras-everywhere-opensource-src-5.15.7.tar.xz | tar xJ && cd qtx11extras-everywhere-src-5.15.7 && qmake && make > /dev/null 2>&1 && make install > /dev/null 2>&1 && cd - && rm -r qtx11extras*
RUN curl -fSsL https://download.qt.io/official_releases/qt/5.15/5.15.7/submodules/qttools-everywhere-opensource-src-5.15.7.tar.xz | tar xJ && cd qttools-everywhere-src-5.15.7 && qmake && make > /dev/null 2>&1 && make install > /dev/null 2>&1 && cd - && rm -r qttools*
RUN curl -fSsL https://download.qt.io/official_releases/qt/5.15/5.15.7/submodules/qtxmlpatterns-everywhere-opensource-src-5.15.7.tar.xz | tar xJ && cd qtxmlpatterns-everywhere-src-5.15.7 && qmake && make > /dev/null 2>&1 && make install > /dev/null 2>&1 && cd - && rm -r qtxmlpatterns*
RUN curl -fSsL https://download.qt.io/official_releases/qt/5.15/5.15.7/submodules/qtwayland-everywhere-opensource-src-5.15.7.tar.xz | tar xJ && cd qtwayland-everywhere-src-5.15.7 && qmake && make > /dev/null 2>&1 && make install > /dev/null 2>&1 && cd - && rm -r qtwayland*

# qwt
RUN curl -fSsL http://downloads.sourceforge.net/qwt/qwt-6.2.0.tar.bz2 | tar xj && cd qwt-6.2.0 \
 && sed -i "s|QWT_INSTALL_PREFIX    = /usr/local/qwt-\$\$QWT_VERSION|QWT_INSTALL_PREFIX = /usr/local|g" qwtconfig.pri \
 && qmake && make > /dev/null 2>&1 && make install > /dev/null 2>&1 && cd - && rm -r qwt*

# paraview
RUN curl -fSsL https://paraview.org/files/v5.10/ParaView-v5.10.1.tar.xz | tar xJ && cd ParaView-v5.10.1 \
 && curl -L https://gitlab.kitware.com/paraview/paraview/-/merge_requests/5616.patch | patch -p1 \
 && curl -L https://gitlab.kitware.com/paraview/paraview/-/commit/21389980b7183439a1b193a03fc0fed6915bcb44.patch | patch -p1 \
 && curl -L https://gitlab.kitware.com/vtk/vtk/-/merge_requests/9227.patch | patch -p1 -d VTK \
 && curl -L https://gitlab.kitware.com/vtk/vtk/-/merge_requests/9228.patch | patch -p1 -d VTK \
 && sed -i '28i#include "vtkDataSetAttributes.h"' VTK/Charts/Core/vtkScatterPlotMatrix.cxx \
 && curl -L https://gitlab.kitware.com/vtk/vtk/-/merge_requests/9711.patch | patch -p1 -d VTK \
 && mkdir build && cd build \
 && cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_INSTALL_PREFIX=/usr/local/ \
  -DCMAKE_Fortran_COMPILER=/opt/rh/devtoolset-8/root/usr/bin/gfortran \
  -DPARAVIEW_ENABLE_EMBEDDED_DOCUMENTATION=OFF -DPARAVIEW_USE_VTKM=OFF \
  -DOPENGL_opengl_LIBRARY=/usr/lib64/libGL.so .. \
 && make install > /dev/null 2>&1 && cd ../.. && rm -r ParaView*

# openturns
RUN git clone https://github.com/openturns/openturns.git && cd openturns && git checkout v1.20 \
 && curl -L https://github.com/openturns/openturns/pull/2202.patch | patch -p1 \
 && cmake -DCMAKE_UNITY_BUILD=ON -DCMAKE_UNITY_BUILD_BATCH_SIZE=32 -DCMAKE_CXX_FLAGS="-D_GLIBCXX_ASSERTIONS" \
    -DPYTHON_EXECUTABLE=/usr/local/bin/python3 -DUSE_SPHINX=OFF . && make install > /dev/null 2>&1 && cd - && rm -r openturns*

# otmorris
RUN git clone https://github.com/openturns/otmorris.git && cd otmorris && git checkout v0.13 \
 && cmake -DUSE_SPHINX=OFF -DCMAKE_CXX_FLAGS="-D_GLIBCXX_ASSERTIONS" -DPYTHON_EXECUTABLE=/usr/local/bin/python3 -DUSE_SPHINX=OFF . \
 && make install > /dev/null 2>&1 && cd - && rm -r otmorris*

# otfmi
RUN pip install git+https://github.com/openturns/otfmi@v0.15 && python3 -c "import otfmi"

# openmodelica
RUN git clone -b v1.19.3 --depth 1 https://github.com/OpenModelica/OpenModelica.git && cd OpenModelica \
 && git submodule update --init --recursive OMCompiler/3rdParty \
 && cd OMCompiler && autoconf && ./configure --prefix=/usr/local && make > /dev/null 2>&1 && make install > /dev/null 2>&1 \
 && cd ../.. && rm -r OpenModelica*

# devel user
RUN useradd -m -d /home/devel -u 1000 -U -G users,tty -s /bin/bash devel
RUN echo 'devel ALL=(ALL) NOPASSWD:ALL' >> /etc/sudoers
USER devel