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28,29,30,31,32,36,39],caution:[29,39],caveat:12,ccach:1,ccc:[19,29],cccc:28,ccccc:[28,29],ccccccc:28,cccccccccc:29,cctx:36,cdb:31,cdot:[15,16,25,36,38],cell:[10,22,38,39],cend:22,center:[26,28,38],central:1,certain:[12,13,21,24,28,29,31,32,33,36,38,39],certainli:[18,29],certfil:31,certif:31,cfd:10,cflag:24,cgl:28,cgne:28,cgs:28,cgstab:28,chac:19,chaco:19,chad:19,chain:[1,13,38],challeng:33,chang:[1,2,4,10,11,12,18,21,22,23,24,25,28,29,31,32,35,36,37,38],changed_i:36,changed_x:36,changeset:4,channel:[7,32],chapter:[0,1,6,9,21,22,23,24,25,29,32,33,36,39],charact:[11,12,23,24,31,37],character:38,characterist:29,chart:22,cheaper:[28,29],cheat:36,chebyshev:28,check:[1,6,9,11,12,16,21,22,25,28,32,37],check_function_exist:1,check_tol:36,checkbadsourc:8,checkcompil:1,checkcompilerflag:1,checker:8,checklink:1,checklinkerflag:1,checkout:8,checkp1:36,checkp:36,checkpoint:[26,34],checkpreprocess:1,checkrun:1,chemistri:38,chemkin:38,chicago:4,child:[1,2,9,35],children:1,chkerra:23,chkerrq:[2,9,12,16,23,24,31,33,36],chkmemq:24,chkxxx:12,choic:[21,24,28,29,31,32,36],choleski:[19,21,24,28],cholmod:28,choos:[1,16,28,31,32,35,36,39],chose:39,chosen:[10,16,24,29,32,35,36,38,39],chuan:28,chunk:[22,24,32],chwarz:28,circuit:[22,35],circumst:[11,24,28],citat:[6,9],cite:[6,9,26,27],claim:16,clang:24,clangd:31,clanguag:31,clarifi:9,classic:[12,28,38],classid:[11,33],classifi:37,classnam:11,clean:[13,21,24,31,33,36],cleaner:29,cleanli:[21,39],cleanup:[1,6,13],clear:[8,9,28,33],clearer:23,clearli:[9,32,36],click:[6,8,31],cliff:36,cliqu:28,clock:[10,32,33],clone:4,close:[1,8,12,22,25,28,29,30,32,33],closelog:1,closur:[15,22],cluster:33,cmake:[1,31],cmakescript:1,cmap:39,cmu:19,coalesc:28,coars:[19,25,28,31,36],coarsen:[2,28,36],coarser:28,coarsest:28,code:[1,2,3,4,5,6,8,10,13,18,19,20,21,22,23,26,27,28,29,32,35,36,39],codeown:8,coeffici:[22,25,28,31,38],cofactor:15,cognit:1,coher:32,col:[21,24,29],collect:[1,11,12,24,29,32,33,36,39],colom:38,colon:[8,31],color:[19,31,33,36,38],colorado:28,colormap:31,colperm:21,column:[6,10,13,21,23,24,28,29,31,33,36],columnpermut:21,com:[4,8,19],combin:[1,13,16,21,31,32,33,36,38,39],come:[24,31,33,36,38],comm:[9,10,11,12,16,21,22,23,24,28,29,30,31,36,38,39],comma:[12,36],command:[1,6,9,10,13,16,21,23,24,28,29,30,31,32,33,35,36,37,38,39],comment:[3,8,13,31],commerci:31,commit:[6,13],common:[1,2,4,5,6,12,13,22,24,28,29,31,32,36,38,39],commonli:[22,32,33],commun:[7,9,11,12,18,20,22,24,26,28,29,32,33,36,39],compact:32,compar:[6,8,13,29,32,36,38],comparison:[12,22,24,36],compat:[1,10,11,29,31,39],compdata:22,compens:32,compet:[31,32],compil:[1,6,9,10,11,12,13,32,37],compile_command:31,compileropt:1,compkei:22,complain:1,complement:[16,28],complet:[1,4,11,12,13,21,22,23,24,28,29,31,32,33,36,38,39],complex:[8,13,14,22,24,28,30,31,32,38,39],complexpart:28,compliant:[13,24,28],complic:[1,10,21,29,32,39],compnum:22,compon:[0,4,8,9,16,24,28,29,31,33,38,39],componentnam:8,componentwis:38,compos:[1,6,9,28,32,33,36],composefunct:11,composit:[11,28,36],compound:31,comprehens:[24,31,32,33,37],compress:[10,11,16,24,29,32],compris:[22,33,39],comput:[0,1,9,10,16,18,19,20,21,22,23,24,25,26,28,29,32,33,35,36,37,38,39],computeinitialguess:2,computeoper:2,computerh:2,con16:38,concaten:29,concecut:28,concept:[23,24,36,39],conceptu:[21,28],concern:[22,29],concis:[1,33],conclud:24,conclus:[24,28,32,33],concret:[12,36],cond:12,condens:28,condit:[12,16,28,29,35,36,38,39],conduct:3,cone:22,conf:[1,4,6,12,24],confer:0,config:[1,8,13,31],configmodul:1,configur:[3,4,6,8,9,12,13,24,28,31,32,33,37,38,39],configure_opt:1,confirm:[6,12],conflict:8,conform:12,confus:[3,6,21],conjug:[28,36],conjunct:[28,29,32,33,39],connect:[1,14,22,28,29,30,32],consecut:[22,29,32],consent:8,consequ:32,conserv:16,consid:[1,3,10,13,22,24,28,29,32,33,35,38,39],consider:[1,28,29,33],consist:[1,9,11,12,13,22,24,28,31,32,33,39],constant:[16,28,29,32,35,36],constantinescu:[24,38],constrain:[25,35],constraint:[16,29,35,36,38],constrast:22,construct:[1,11,12,13,16,22,24,28,29,35,36],constructor:[1,28],consult:[28,32,36],consum:1,cont:31,contact:[18,28,31],contain:[1,6,8,9,11,12,13,19,22,23,24,28,29,31,32,33,35,36,37,39],content:[6,21,24,29],context:[2,12,16,21,23,24,28,29,31,32,35,36,38,39],contigu:[22,24,39],conting:35,continu:[8,16,18,22,23,28,31,35,38],continuum:25,contort:1,contour:31,contract:26,contrast:[22,23,28,32],contrib:13,contribut:[7,22,25,28,36,39],contributor:[8,19],control:[2,8,10,13,19,22,24,26,28,29,30,31,32,34,36],contstrain:28,convect:38,convei:[24,38],conveni:[11,22,31,39],convent:[8,11,22,23,28,29,31,32,36,39],converg:[16,23,24,29,32,33],convers:[32,38],convert:[6,19,28,29,31,33,36,38],convest_num_refin:16,convolut:2,coon:19,cooper:19,coordin:[1,31,38,39],copi:[2,4,6,8,11,13,23,24,28,29,32,39],core:[13,28,32,36],corner:[8,31,39],correct:[6,8,9,12,16,18,21,24,25,28,29,32,36,39],correctli:[1,9,12,22,31,38,39],correspond:[6,10,12,13,16,22,23,24,28,29,30,31,32,35,36,38,39],correspondingli:24,corrupt:[24,28,32],cos:16,cost:[16,28,35],costli:36,could:[21,22,23,24,25,28,29,31,33,38,39],count:[9,11,13,24,28,29,33],counter:[12,33],counterpart:[23,31],coupl:[22,28,29,37],cours:[23,28,29,31,36],courtesi:10,cover:[8,22],cowel:36,cpp:[8,9,11,12,31],cpu:[32,39],crai:19,crank:[35,38],crash:[13,23],crd:19,creat:[1,2,3,6,8,9,10,11,13,21,22,23,24,25,26,28,30,32,33,34,35,36,38],creation:[24,29,32,33,39],creator:[20,26],credibl:35,crf:19,criteria:[36,38],criterion:36,critic:[28,29,36],cron:31,cross:[1,28,31,36,38,39],crpc:0,crucial:[1,10,24,28,29,32,39],crunchi:6,cs10:38,cs97:28,cse:19,csize:22,csr:[10,29],cstart:22,ctag:[24,31],ctetgen:[13,16],ctx:[2,9,16,28,29,31,35,36,39],ctype:28,cubic:[22,33,36],cuda:[13,37],cumbersom:[1,13,29],curfman:[0,9,10,24,26],curl:28,current:[1,2,6,8,9,13,17,21,22,23,24,28,29,31,32,33,35,36,37,38,39],curv:[18,31],cuspars:28,custom:[1,6,12,23,24,28,31,32,36],cut:[8,13,30],cuthil:[21,28],cvode:[19,38],cxx:[13,24,31],cycl:[10,25,28,36],cygwin:6,d_nnz:[10,29],d_nz:[10,29],dabsc:23,dabsc_:23,dacreatexxx:39,dae:[24,26,34,35],dag:[1,22],dagger:36,dai:[3,36],dalcin:[24,26],damp:[25,28,36],damping_factor:28,dampingfactor:28,danni:36,darwin14:24,darwin:[24,30],dash:[12,31],data:[1,2,9,10,11,12,18,19,20,23,24,26,28,29,31,33,34,36,38],databas:[9,12,21,28,29,36,38,39],datafil:13,datafilespath:13,dataset:32,datastructur:[11,32],datatyp:31,date:[21,24,33],dave:[19,24],davi:19,davidon:29,dbx:31,dd_i:23,dd_v:23,ddbook:28,ddot:25,deactiv:[33,36],deal:[14,24,29,32,38,39],dealloc:21,dean:10,debian:[6,19],debojyoti:24,debug:[4,6,9,12,20,24,26,28,30],debugg:[1,8,9,13,18,24,31,33],debugger_rank:31,decid:[1,21,25,28,29,39],decis:[1,21,32],declar:[1,8,12,22,23,29,31,36,39],decompos:[8,28,36],decomposit:36,decreas:[9,11,28,32,36,38,39],deeper:32,def:1,defect:[25,36],defin:[1,2,8,9,10,11,12,13,16,21,22,23,24,28,29,32,33,36,38,39],definit:[13,14,23,24,28],deflat:[19,28],deform:15,degrad:[28,32],degre:[10,19,21,22,28,29,32,36,39],delai:39,delet:[8,29],delimit:13,deliv:24,delta0:36,delta:[15,36,38],delta_0:36,delux:28,demand:[11,16,36],demmel:19,demonstr:[10,23,24,29,32,36],dener:[24,26],denni:36,denot:[11,23,24,28,29,31,36,37,38,39],dens:[11,19,21,28,38],densiti:16,depart:[26,28],depend:[1,6,8,9,10,12,13,15,21,22,23,24,28,29,32,33,35,36,37,38,39],depict:2,deprec:[12,13],depth:[12,22],der:28,dereferenc:11,deriv:[16,22,38],descend:[24,33],descent:36,describ:[1,6,8,10,13,15,18,23,24,28,29,31,32,33,36,38,39],descript:[6,8,12,23,24,25,28,31,38],design:[1,2,3,4,7,9,12,13,18,19,24,28,29,32,36,39],desir:[13,19,21,23,24,28,29,31,32,38,39],destin:[8,29,31,39],destroi:[1,2,9,11,12,21,23,24,28,29,30,31,36,38,39],destroyvec:11,destruct:[24,29,33],det:15,detail:[2,8,10,11,12,13,16,20,23,24,26,28,29,31,33,36,37,39],detect:[1,8,9,21,23,24,28,31,36,38],determin:[1,3,9,10,15,16,22,24,25,28,29,31,32,33,36,38,39],dev:[3,8,31],develop:[0,1,12,13,17,18,19,20,22,24,26,28,29,32,33,36,37,38],dfp:29,dgmre:28,diag:[28,29],diag_valu:29,diagnosi:1,diagnost:[1,24],diagon:[10,16,21,28,29,31],diagram:[22,24],dictionari:13,did:[29,38],dif:13,diff:[8,13,36],diff_arg:13,differ:[2,8,9,10,11,12,13,15,16,17,19,22,24,25,26,28,29,31,32,34,35,38,39],differenc:[35,36],differenti:[18,22,24,28,29,35,38],difficult:[1,12,13,28,32,36],difficulti:[24,29],diffus:[15,35,36,38],digit:[28,36],dim:[16,28],dimens:[9,16,22,23,24,28,29,35,38,39],dimension:[10,24,28,29,31,36,38,39],dinesh:24,dir:31,direct:[1,4,6,9,10,12,19,22,23,24,28,29,31,32,36,38,39],directli:[3,4,6,9,11,12,13,18,21,22,23,24,28,29,30,31,33,35,36,38,39],directori:[1,6,8,11,12,13,14,21,23,26,27,31,36,37],dirichet:28,dirichlet:29,dirnam:1,disabl:[29,32,33],disappoint:10,disast:1,discard:[8,29,31],disciplin:1,discontinu:[26,34,35],discov:[1,28],discret:[14,15,16,22,24,25,26,28,34,36,38,39],discuss:[1,8,9,10,11,12,13,21,23,24,25,28,29,31,32,33,36,37,38,39],disk:[16,24,30,31,33,35],displ:12,displac:15,displai:[6,8,9,10,24,28,31,36,39],dissect:[21,28],distanc:36,distdm:22,distinct:9,distinguish:[1,11],distort:33,distribut:[18,22,24,26,28,29,31,32,34,36],disturb:21,div:28,diverg:[16,28,36],divid:[11,16,22,24,28,32,39],divis:[25,26,33],dll:11,dllist:11,dm_2:2,dm_boundary_ghost:39,dm_boundary_mirror:39,dm_boundary_non:[36,39],dm_boundary_period:39,dm_boundary_twist:39,dm_classid:2,dm_plex_box_dim:16,dm_plex_box_fac:16,dm_plex_box_simplex:16,dm_refin:16,dmboundarytyp:39,dmc:2,dmcoarsenhook_dmksp:2,dmcoarsenhook_dmxxx:2,dmcoarsenhookadd:2,dmcomposit:29,dmcompositegetlocaliss:29,dmcopydmksp:2,dmcreatecolor:36,dmcreatedomaindecomposit:28,dmcreateglobalvector:[36,39],dmcreatelocalvector:39,dmcreatematrix:[22,28,36],dmda:[19,22,28,30,36],dmda_stencil_box:39,dmda_stencil_star:39,dmdabsc:23,dmdacreate1d:[36,39],dmdacreate2d:39,dmdacreate3d:39,dmdagetao:39,dmdagetcorn:[36,39],dmdagetghostcorn:39,dmdagetinfo:36,dmdagetscatt:39,dmdasnessetjacobianloc:36,dmdastenciltyp:39,dmdavecgetarrai:[12,36,39],dmdavecgetarraydof:39,dmdavecgetarraydofread:39,dmdavecgetarrayf90:23,dmdavecgetarrayread:[36,39],dmdavecgetarrayreadf90:23,dmdavecrestorearrai:[36,39],dmdavecrestorearraydo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g:[24,31],etc:[1,14,22,24,28,29,31,32,33,37,39],eth:26,ethan:19,euclidean:22,euler:[10,14,35,38],evalu:[1,9,16,19,23,26,29,32,33,34,35,39],even:[1,12,13,22,28,29,31,32,36,38,39],evenli:32,evenrequir:28,event:[11,20,24,26,32,35,38],eventhandl:38,eventmonitor:38,eventp:38,eventu:29,ever:[6,28,29],everi:[1,8,22,28,29,30,36,38],everyth:15,everywher:38,evolv:24,ew96:36,ewton:36,ex10:[13,33],ex11:[22,31],ex11f:31,ex138:13,ex138_1:13,ex138_2:13,ex16adj:35,ex16opt_:35,ex16opt_p:35,ex19:[24,39],ex1:[13,31],ex1_1:[13,23],ex1_basic_1:13,ex20adj:35,ex20opt_:35,ex20opt_p:35,ex23:24,ex28:29,ex2:[13,39],ex2f:39,ex32:31,ex3:[13,24],ex3adj:35,ex3opt:35,ex42:30,ex59:28,ex5:[29,32,36,39],ex5adj:35,ex5f:[32,36,39],ex62:28,ex6:37,ex7:[28,30],ex8:28,ex9:13,ex9_1:13,ex9busadj:35,ex9busopt:35,exact:[12,16,24,28,29,33,36],exactfunc:16,exactli:[2,8,16,21,22,24,28,29],examin:[1,6,13,24,29,31,39],exampl:[1,2,4,6,8,9,10,11,12,16,17,18,19,21,22,23,25,26,27,28,29,30,31,32,33,35,36,37,38,39],example_templ:13,excel:[19,24,31,36],except:[6,11,12,21,23,24,28,29,31,32,33,37,39],excess:36,exchang:[11,32],exclud:[16,31,39],execfil:1,execut:[1,12,13,24,28,31,32,33],executetest:1,exhaust:36,exhibit:36,exist:[1,2,6,11,23,29,31,38,39],exit:[13,24,31],expand:1,expect:[6,13,18,21,24,28,29,32,38],expens:[13,21,28,29,31,32,36],experi:[1,4,9,18,24,29,31],experienc:24,experiment:[22,28,32],expert:1,explain:[1,11,13,24,28,36,38],explan:8,explanatori:38,explicit:[12,19,26,28,29,34,35,36],explicitli:[1,13,16,22,23,28,29,31,36,38],explor:[2,24,31,32],expon:16,express:[12,15,22,25,32,33],exrk2a:38,ext:1,extchem:38,extchemfield:38,extend:[13,28],extenr:1,extens:[0,6,10,13,18,24,31,32,33,38],extern:[1,6,10,13,19,23,24,26,29,31,34,36,37],externalpackagesdir:1,externalpackagesdirprovid:1,extra:[13,28,29,31,35,36,39],extract:[20,22,23,24,26,28,29,36,39],extrapol:38,extrem:[1,11,12,24,26,28],f0_p:16,f0_quadratic_u:16,f10:23,f1_u:16,f2c:19,f2cblaslapack:24,f90:[12,19],f_0:[16,22,36],f_1:[16,22],f_i:25,f_k:25,f_p:35,f_u:[35,38],f_y:35,fabric:32,face:[22,28,39],facet:36,facil:[1,28,32],facili:32,facilit:[23,29,36,39],fact:[1,13,16,22,24,28,29,39],factor:[10,16,19,20,25,26,29,33,36,38],faculti:19,fail:[1,8,23,28,36,37],failur:[1,8,28,31],fairli:[28,32,36],fall:[8,28],fals:[9,13,28,33,36],famili:[24,28,29,38],familiar:[1,8,13,24,39],faq:24,far:[1,28,32],farrel:19,farther:32,fas:36,fashion:[1,36],fast:[13,22,28,32,36],faster:[28,32],fastest:32,fastyp:36,fault:35,favor:13,fbcg:28,fbcgsr:28,fcg:28,fct:36,fdcolor:36,featur:[1,3,9,12,13,18,20,22,24,26,29],feedback:31,feel:[8,13],fehlberg:38,fem:38,fetch:8,feti:28,fetidp:28,few:[1,19,23,24,28,29,32,33,36,37,38],fewer:[28,32,36],ffast:32,fflag:24,fftw:13,fgmre:[28,36],fgn92:28,fiber:22,field:[11,13,16,28,39],fieldsplit:16,fieldsplit_1:28,fieldsplit_1_lsc_:28,fieldsplit_1_mat_schur_complement_ainv_typ:28,fieldsplit_1_pc_typ:28,fieldsplit_name_:28,fieldsplit_pressure_ksp_rtol:16,fieldsplit_pressure_pc_typ:16,fieldsplit_velocity_pc_typ:16,fifth:23,fig:[22,29,32],fig_exparprof:33,fig_stream_intel:32,figshar:9,figur:[2,6,13,24,33,39],file1:8,file2:8,file:[1,3,4,6,9,11,12,13,16,19,20,21,26,29,30,31,32,35,36,37,38],filenam:[9,13,23,30,31,33,38],filesystem:1,fill:[21,23,28,29,31,32],fill_amount:32,filter:[13,38],filter_output:13,finclud:[12,23,24],find:[3,6,8,9,13,16,22,24,28,29,31,32,36,38],findpackag:1,fine:[12,25,28,29,39],finer:[22,30,32],finest:28,finish:[23,28,29,39],finit:[8,14,15,19,22,24,25,26,28,29,34,38,39],firewal:4,first:[1,3,6,8,9,10,11,12,13,16,21,22,24,25,28,29,31,32,33,35,36,38,39],first_loc:28,first_row:29,fischer:19,fit:[13,28,32,36],five:[13,18,24,32,36],fix:[6,8,10,13,19,28,29,35,36],fjac:38,flag:[1,13,22,23,24,28,31,32,33,36,38],flash:31,flat:[1,32],flavor:36,fletcher:[29,36],flex:6,flexibl:[9,13,18,19,22,24,28,29,32,36],flg:[12,16,23,24,28,31,36],flop:[10,11,12,24,32,33],florian:19,flow:[10,15,16,29,35],fluctuat:32,fluid:[15,16],flush:29,flycheck:31,fname:11,fnorm:36,focu:[13,29,32,33,36],focus:[33,36],fold:32,folder:8,follow:[1,2,3,4,6,8,9,10,11,12,13,16,19,21,22,23,24,28,29,31,32,33,35,36,38,39],font:31,foo:[6,13],footcit:6,footnot:6,footprint:29,for94:[24,31],forbidden:29,forc:[1,13,15,16,28,32,36],form:[1,2,6,13,16,22,23,24,25,28,29,31,32,35,36,38],format:[1,6,8,9,10,11,13,16,19,21,23,24,28,29,30,31,32,36,38,39],former:[12,39],formfunct:[23,36],formfunction1:36,formfunction2:36,forminitialguess:36,formjacobian1:36,formjacobian2:36,formjacobian:[23,36],formul:[26,34],formula:[28,29,36,38],forth:[12,30],fortran90:23,fortran:[1,9,10,12,13,18,20,24,26,29,31,32,36,39],fortran_func_point:[2,11],fortun:36,forum:24,forward:[8,29,33,35,38],found:[0,1,6,12,13,14,17,24,28,31,32,33,36,37,39],foundat:24,four:[21,22,24,28,29,32,33,36,39],fourier:25,fp_trap:[24,31],fpic:1,fprintf:[9,33],frac:[15,16,25,35,36,38],fraction:[31,32,33],fragment:[23,33,36],frame:31,framework:[21,25,28,31,35,36,38],franci:9,fre93:28,free:[8,9,11,12,16,22,23,24,26,28,31,34,35,39],freed:[9,11,12,32],freedom:[10,19,22,28,29,32,36,39],freeli:31,frequenc:[25,35],frequent:[1,6,22,24,29,32],fresh:8,freund:28,friendli:6,frog:6,from:[1,3,9,10,11,12,13,16,19,21,22,24,25,26,28,29,30,32,33,34,36,37,39],front:8,ftn:[12,31],ftp:[0,4,9,33],ftype:21,full:[1,8,13,16,18,23,24,25,28,29,31,32,37,39],fulli:[1,12,23,26,28,29,31,32,34,36],fulllength:9,fun:8,func:[2,9,11,12,36],functionnam:[11,31],fund:8,fundament:29,funnel:1,funp:38,funtion:31,further:[13,23,28,29,31,36,39],furthermor:[1,24],futur:[1,28,29,32],fvisibl:24,fwd:35,g0_pp:16,g3_uu:16,g9c9a9c5:24,g_u:38,gain:[1,4,32],galerkin:[16,22,28],gamg:[28,32],gamma:[16,38],gamv13:28,gannet:6,garbow:36,gasm:28,gather:24,gauss:[21,28,36],gbe3efd42:33,gcc5:24,gcc:[6,24,32],gcc_:31,gcr:[19,28],gdb:[18,24,31],gener:[1,3,9,10,11,12,13,16,18,19,21,22,24,25,26,28,29,30,31,32,33,34,35,37,38,39],genfrac:36,geo:28,geometr:28,geometri:28,geophys:26,georg:[28,29],get:[1,2,6,8,11,12,13,16,18,22,23,26,27,28,30,31,32,36,38,39],getal:33,getccompil:24,getcflag:24,getchild:1,getcomm:11,getcwd:1,getcxxcompil:24,getcxxflag:24,getexecut:1,getfortrancompil:24,getfortranflag:24,getincludedir:[24,31],getint:23,getlinklib:[24,31],getrusag:32,gforg:19,gfortran:[24,31],ghatta:28,ghosh:24,ghost:[6,22,28,29,36],ghysel:28,gilbert:[19,29],giraldo:38,git:[6,13,19,24,31,33],git_ps1_showdirtyst:8,git_ps1_showupstream:8,github:19,gitlab:[4,6,13],gitmessag:8,give:[3,8,10,13,16,24,28,31,32,33,36,38,39],given:[1,9,10,11,12,15,16,21,22,23,24,25,28,29,30,31,32,33,35,36,38,39],gkc13:38,gl89:29,glanc:29,glean:1,glee:[26,34],glob:13,global:[1,6,8,10,22,24,28,29,31,32,33,36],globalin:39,globalnum:39,globalout:39,globalvec:22,gls94:24,gltr:28,gmake:[13,37],gmakefil:[13,37],gmakegentest:13,gmakesearch:13,gmakesearchin:13,gmre:[13,19,24,28,32,33,36,38],gnorm:[23,36],gnu:[1,6,31],goal:[13,32],goe:8,goldfarb:29,goldfeld:19,golub:28,good:[1,6,8,10,22,24,25,28,29,32,33,36],gov:[0,3,4,9,18,19,24,28,31,35,36],govern:[15,35],gpl:31,gpu:[8,19],gpu_awar:13,grad:28,gradient:[15,16,24,28,35,36],grai:39,gram:28,granular:32,graph:[1,19,22,28,29,36],graphic:[19,20,24,26,28],graphviz:6,great:[1,24,29],greatli:[14,32],greedi:[28,36],green:[8,15],grep:[8,13,28,31],gri12:29,grid:[19,25,26,28,29,31,34,35,36],griddata:30,griewank:29,gro95a:12,gro95b:12,gropp:[0,6,9,10,12,19,24,26,28,33],groppcg:28,group:[1,8,13,29,36],gs94:0,gscatter:36,gsed:6,gtag:31,gtol:39,guarante:[9,21,32],guard:1,guess:[23,25,28,29,32,36],gui:[20,26],guid:[4,7,8,17,24,28,32,38],guidelin:[3,12,32],gv14:28,had:[11,21,36],half:[28,32],hall:36,halt:38,hamano:8,hand:[13,19,24,28,29,31,32,33,35,36,38,39],handbook:0,handi:32,handl:[1,3,5,11,13,16,20,22,24,25,26,28,33,34,39],handler:[24,31],handlercontext:31,handlerfunct:31,hang:[31,33],happen:3,hard:[1,12,13,32,36],harder:[1,36],hardwar:[1,10,32],hardwir:[10,28,32,36],harm:28,has:[1,2,4,6,8,9,10,11,12,13,14,15,16,18,19,21,22,23,24,28,29,30,31,32,35,36,38,39],hasconst:28,hass:22,haswel:32,hat:28,have:[0,1,2,4,6,8,9,10,11,12,13,14,15,16,21,22,23,24,25,28,29,31,32,33,35,36,37,38,39],havoc:1,hdf5:19,hdfgroup:19,head:[8,12],header:[1,5,6,12,31],headerprefix:1,heart:[28,33],heat:14,heavili:1,height:[22,23,31],held:[9,25],help:[1,4,8,10,13,21,23,24,28,29,31,32,36,37,39],helper:[28,36],henc:[8,11,12,22,24,28,32,36,38,39],henceforth:35,henri:19,her:28,here:[1,6,8,11,12,13,16,17,21,22,23,24,25,28,29,31,32,33,35,36,38,39],hermitian:28,herrart:33,hessenberg:28,hesten:[28,36],heurist:36,hex:28,hexahedra:8,hexfem:8,hidden:24,hide:28,hierarch:[1,13,18,24,28,33,36],hierarchi:[10,22,25,32,33,36],high:[10,16,18,26,28,29,31,32,33,34,38,39],higher:[0,1,16,24,28,32,33,38],highest:[24,28,32],highli:[24,28,38],highlight:[6,24],hill:19,hillstrom:36,hindmarsh:38,hint:[20,26,33],hip:13,his:28,histor:23,histori:[3,8,19,29,33],hit:10,hl91:33,hline:29,hnew:38,hoiland:19,hold:[1,16,21,22,28,39],home:[24,31,33],homepag:24,hong:24,hook:[1,2,31],hope:21,host:[1,30],hostnam:31,hour:[3,8,37],how:[1,5,6,11,12,13,16,21,24,25,29,31,32,36],howev:[1,10,13,16,18,22,23,24,25,28,29,31,32,33,35,36,38,39],hpp:31,hs52:28,htm:[24,38],html:[6,8,13,18,19,24,28,31,35,37],http:[4,6,8,12,13,18,19,24,28,31,33,35,36,37],htype:36,hu_i:36,hub:1,huge:22,hulbert:38,human:1,hundr:[28,32],hwloc:32,hybrid:[22,28,36],hyper:32,hyperbol:38,hyperlink:[6,24],hyperthread:32,hypr:[1,19,28,32],i20:23,iain:19,ibcg:28,ibm:[10,23,28,31,36],icc:[13,24],ice:28,icntl:28,ide:31,idea:[8,21,33,38],ideal:[6,24,28],ident:[10,23,24,28,29,32,35,36,38,39],identifi:[11,22,33,36,39],idx:[23,36,39],idx_from:39,idx_to:39,idxin:39,idxm:29,idxn:29,idxout:39,ieee:[0,32],iend:24,ierr:[2,9,11,12,16,23,24,31,33,36,38],ierr__:9,ifdef:12,ifndef:12,ifneed:28,ignor:[13,21,28,31,39],ill:28,illinoi:[12,26],illustr:[23,24,28,29,39],ilu:[10,24,32,33],imag:6,imaginari:31,imex:[26,34],immedi:[4,10,12,24],impact:[8,29],imper:1,impl:[8,11,12,13,21,24],implemen:32,implement:[1,2,4,5,10,12,16,18,19,23,24,28,31,32,33,36,38,39],impli:32,implicit:[10,23,26,34,35],implicitli:[21,22,38],impos:28,imposs:22,improv:[1,8,10,21,28,32,33,36,39],inc:35,incarn:6,incid:[35,36],includ:[1,6,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about PETSc Design","BuildSystem","How the Solvers Handle User Provided Callbacks","Communication Channels for PETSc Development","Contributing to PETSc","The Design of PETSc","Developing PETSc Documentation","PETSc Developer\u2019s Documentation","PETSc Integration Workflows","The PETSc Kernel","The Various Matrix Classes","Basic Object Design and Implementation","PETSc Style and Usage Guide","PETSc Testing System","Guide to PETSc Tutorial Examples","Guide to PETSc Tutorial Examples, by Physics","Guide to the Stokes Equations using Finite Elements in PETSc","PETSc 3.14 Documentation","About This Manual","Acknowledgments","Additional Information","Unimportant and Advanced Features of Matrices and Solvers","DMPlex: Unstructured Grids in PETSc","PETSc for Fortran Users","Getting Started","High Level Support for Multigrid with KSPSetDM() and SNESSetDM()","PETSc Users Manual","Introduction to PETSc","KSP: Linear System Solvers","Matrices","Using MATLAB with PETSc","Other PETSc Features","Hints for Performance Tuning","Profiling","Programming with PETSc","Performing sensitivity analysis","SNES: Nonlinear Solvers","Running PETSc Tests","TS: Scalable ODE and DAE Solvers","Vectors and Parallel Data"],titleterms:{"case":38,"class":[10,23,31],"function":[11,12,22,36],"new":8,"null":23,"switch":8,MMS:16,ODE:38,One:22,The:[5,9,10,24,31,33,36],Use:32,Using:[28,30,31,33,35,38,39],about:[0,18],access:[32,39],accur:33,accuraci:36,acknowledg:19,adapt:25,adaptor:38,addit:[13,20,28,32,36],adjoint:35,advanc:[13,21],advic:32,aggreg:32,aij:[10,29],algebra:28,alloc:32,amg:28,analysi:35,anoth:22,appl:31,applic:[22,24,33,39],approxim:36,argument:23,arrai:[23,39],articl:0,ascii:30,assembl:[29,32,39],assort:10,avail:38,balanc:28,bandwidth:32,base:[1,13],basic:[11,29,33,36,38,39],batch:1,befor:8,between:8,bibliographi:16,binari:30,block:[10,13,28,29],branch:[4,8],brows:4,build:[1,6,13,32],buildsystem:1,cach:1,call:23,callback:2,chang:[6,8],channel:3,check:[8,23,24,31,36],checkpoint:35,cite:24,code:[9,11,12,24,31,33],combin:28,command:8,comment:12,commit:8,common:11,commun:[3,31],compil:[23,24,31],complet:8,compon:22,compos:11,comput:30,configur:1,consider:32,constraint:28,contribut:[4,8],control:[1,9,38],convent:12,converg:[28,31,36],creat:[29,31,39],creation:9,creator:31,dae:38,data:[22,30,32,39],databas:[24,31],deal:[1,16],debug:[13,31,32],decomposit:28,defin:31,definit:16,dens:[10,29],deriv:36,descript:13,design:[0,5,8,11],destruct:9,detail:[9,21,32],detect:32,determin:13,develop:[3,4,6,7,8,31],differ:[23,36],directori:24,disabl:31,discontinu:38,discret:35,distribut:39,dmda:39,dmplex:22,doc:[6,8],document:[6,7,17],domain:28,draw:[23,31],dump:30,duplic:23,eclips:31,effici:32,elastostat:15,element:16,emac:31,engin:30,entri:39,environ:1,equat:[15,16],error:[1,9,23,24,31,38],estim:38,etc:8,euler:15,evalu:[22,36],event:[9,33],ex19f:23,ex1:[24,36],ex1f:23,ex2:24,ex3:[31,36],ex4f:23,ex5f:23,exampl:[13,14,15,24],experi:32,explicit:[1,38],extern:28,extract:21,f90:23,factor:[21,28,32],fail:13,featur:[8,21,31],file:[8,23,24,33],finit:[16,36],flow:[1,22],fork:8,format:12,formul:38,fortran:23,framework:1,free:[29,36],from:[6,8,23,31,38],full:36,fulli:38,further:8,gather:39,gener:[6,36],get:[4,24],ghost:39,git:[4,8],gitlab:[3,8],given:13,glee:38,global:[38,39],graph:31,graphic:31,grid:[22,39],gui:31,guid:[12,14,15,16],guidelin:6,handl:[2,8,9,31,38],handler:9,har:13,header:11,heat:15,hessenberg:38,high:[1,25],hint:32,how:[2,4],iOS:31,icc:28,ilu:28,imbal:31,imex:38,implement:[9,11,13,29],implicit:38,includ:[23,24],index:[38,39],indic:23,inequ:36,inexact:36,influenc:22,inform:[20,33,37,39],instruct:8,integr:[8,38],interact:30,interfac:[9,23],interpol:25,interpret:33,introduct:[11,13,27],ipad:31,iphon:31,jacobi:28,jacobian:36,job:13,jumpshot:33,keep:31,kernel:9,krylov:[28,36],ksp:[21,24,28],kspsetdm:25,kutta:38,languag:[1,13],latex:6,layout:22,level:[1,25],like:36,limit:29,line:[31,36],linear:[24,28,32],link:23,list:[3,23,24,28,31,36],lmvm:29,load:31,local:[6,39],locat:39,log:[8,33],log_info:33,log_mp:33,log_view:33,look:31,loop:13,mac:31,macro:12,mail:3,main:[1,6],make:6,makefil:13,manag:9,manual:[12,18,26],map:39,master:[4,8],matlab:30,matric:[10,21,24,28,29],matrix:[10,21,23,29,32,36],maxim:32,memori:[9,29,32],merg:8,messag:[8,9,33],method:[28,35,36,38],metric:29,miscellan:8,monitor:[28,31,36,38],more:[8,37],multi:1,multigrid:[25,28],multipl:[23,33],name:12,namespac:1,navier:15,necessari:1,network:22,newton:36,nightli:4,non:32,nonlinear:[24,36],numa:32,number:31,numer:32,object:[1,9,11,28,31],obtain:4,onli:8,oper:[28,29,39],optim:32,option:[13,24,28,31,36,38],order:[22,39],organ:[1,11],other:[4,28,29,31],out:8,output:[13,33,37],overhead:33,overlap:28,packag:11,page:[12,33],parallel:[10,24,29,31,33,39],paramet:16,pars:13,partial:28,partit:[22,29],pass:23,perform:[32,33,35],petsc:[0,1,3,4,5,6,7,8,9,11,12,13,14,15,16,17,22,23,24,26,27,28,29,30,31,34,36,37,38,39],petscdraw:31,petscopt:31,petscview:31,physic:15,pipelin:8,pitfal:32,placement:32,pointer:23,poisson:15,port:6,prealloc:29,precondit:[28,36],precondition:28,prefix:31,problem:[32,35],process:[8,31,32],profil:[9,24,32,33],program:[23,24,34],project:31,prompt:8,provid:2,pseudo:35,quasi:36,queri:[11,13],question:3,quick:[8,37],read:[8,24],refer:[0,9,10,12],region:36,relat:[32,39],releas:8,remot:8,repres:22,request:[3,8],residu:22,respond:3,restrict:33,retriev:22,reus:32,review:8,rosenbrock:38,routin:23,run:[13,24,37],rung:38,runtim:[13,31],sampl:23,save:33,saw:31,scalabl:38,scatter:39,scheme:[36,38],schwarz:[28,36],script:13,search:[13,36],section:33,send:30,sensit:35,sequenti:[10,29],session:30,set:[23,39],setup:8,shell:[13,28],simpl:[11,24,31],simplifi:9,singl:13,singular:28,sne:[23,36],snessetdm:25,solut:[16,38],solv:[28,35],solver:[2,21,24,28,32,36,38],sor:28,sourc:[4,11],spars:[10,29,32],special:38,specif:13,spectrum:28,sphinx:6,src:[23,24,31,36],ssor:28,stagger:39,standard:13,start:[8,24,37],state:35,steadi:35,step:38,stoke:[15,16],strategi:10,structur:[24,32,39],studio:31,style:12,submatric:21,submit:8,subpackag:1,subset:31,success:28,suggest:[8,24],summari:8,sundial:38,support:25,sys:23,system:[13,28,31,32],tab:8,tag:31,tap:13,tarbal:4,tchem:38,test:[1,8,13,23,28,31,36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