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<h1>Changes: 3.19<a class="headerlink" href="#changes-3-19" title="Link to this heading">#</a></h1>
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<li><p>Add perfstubs package, see <a class="reference internal" href="../manual/profiling.html#sec-using-tau"><span class="std std-ref">Users Manual: Profiling: Using TAU</span></a> for more information on usage</p></li>
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<p class="rubric">Configure/Build:</p>
<ul class="simple">
<li><p>Remove unused preprocessor variables <code class="docutils notranslate"><span class="pre">PETSC_HAVE_VPRINTF_CHAR</span></code>, <code class="docutils notranslate"><span class="pre">PETSC_HAVE_VFPRINTF_CHAR</span></code>, <code class="docutils notranslate"><span class="pre">PETSC_STAT_MACROS_BROKEN</span></code>, <code class="docutils notranslate"><span class="pre">PETSC_HAVE_FORTRAN_GETARG</span></code>, <code class="docutils notranslate"><span class="pre">PETSC_uid_t</span></code>, <code class="docutils notranslate"><span class="pre">PETSC_gid_t</span></code>, <code class="docutils notranslate"><span class="pre">PETSC_HAVE_PTHREAD_BARRIER_T</span></code>, <code class="docutils notranslate"><span class="pre">PETSC_HAVE_SCHED_CPU_SET_T</span></code>, <code class="docutils notranslate"><span class="pre">PETSC_HAVE_SYS_SYSCTL_H</span></code>, <code class="docutils notranslate"><span class="pre">PETSC_HAVE_SYS_SYSINFO_H</span></code>, <code class="docutils notranslate"><span class="pre">PETSC_HAVE_SYSINFO_3ARG</span></code>, <code class="docutils notranslate"><span class="pre">PETSC_SIZEOF_SHORT</span></code>, and <code class="docutils notranslate"><span class="pre">PETSC_SIZEOF_ENUM</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre">--with-gcov</span></code> configure option in favor of <code class="docutils notranslate"><span class="pre">--with-coverage</span></code></p></li>
<li><p>Add <code class="docutils notranslate"><span class="pre">--with-coverage-exec</span></code> configure option to specify the coverage-collection tool to be used e.g. <code class="docutils notranslate"><span class="pre">gcov</span></code> or <code class="docutils notranslate"><span class="pre">/path/to/llvm-cov-15</span></code></p></li>
<li><p>Add <code class="docutils notranslate"><span class="pre">--with-strict-petscerrorcode</span></code> configure option to enable compile-time checking for correct usage of <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PetscErrorCode.html">PetscErrorCode</a></span></code>, see below</p></li>
<li><p>Add support for C++20</p></li>
<li><p>Add support for CUDA-12</p></li>
<li><p>Improved C++ dialect handling for non-conformal cases. In general <code class="docutils notranslate"><span class="pre">configure</span></code> will fail faster and with a more informative error message when the C++ compiler does not comply with restraints</p></li>
</ul>
<p class="rubric">Sys:</p>
<ul>
<li><p>Change <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PetscOptionsMonitorDefault.html">PetscOptionsMonitorDefault</a>()</span></code> to also take in the option source, and <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PetscOptionsMonitorSet.html">PetscOptionsMonitorSet</a>()</span></code> to take the new monitor function</p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre">PetscTable</span></code> and related functions. Previous users of <code class="docutils notranslate"><span class="pre">PetscTable</span></code> are encouraged to use the more performant <code class="docutils notranslate"><span class="pre"><a href="../manualpages/PetscH/PetscHMapI.html">PetscHMapI</a></span></code> instead, though they should note that this requires additional steps and limitations:</p>
<ol class="arabic">
<li><p><code class="docutils notranslate"><span class="pre">#include</span> <span class="pre">&lt;petscctable.h&gt;</span></code> must be swapped for <code class="docutils notranslate"><span class="pre">#include</span> <span class="pre">&lt;petsc/private/hashmapi.h&gt;</span></code>. This of course requires that you have access to the private PETSc headers.</p></li>
<li><p>While most of the old <code class="docutils notranslate"><span class="pre">PetscTable</span></code> routines have direct analogues in <code class="docutils notranslate"><span class="pre"><a href="../manualpages/PetscH/PetscHMapI.html">PetscHMapI</a></span></code>, <code class="docutils notranslate"><span class="pre">PetscAddCount()</span></code> does not. All uses of this routine should be replaced with the following snippet:</p>
<div class="highlight-c notranslate"><div class="highlight"><pre><span></span><span class="c1">// <a href="../manualpages/PetscH/PetscHMapI.html">PetscHMapI</a> hash_table;</span>
<span class="c1">// <a href="../manualpages/Sys/PetscInt.html">PetscInt</a>   key;</span>

<span class="n">PetscHashIter</span><span class="w"> </span><span class="n">it</span><span class="p">;</span>
<span class="n"><a href="../manualpages/Sys/PetscBool.html">PetscBool</a></span><span class="w">     </span><span class="n">missing</span><span class="p">;</span>

<span class="n"><a href="../manualpages/Sys/PetscCall.html">PetscCall</a></span><span class="p">(</span><span class="n"><a href="../manualpages/PetscH/PetscHMapIPut.html">PetscHMapIPut</a></span><span class="p">(</span><span class="n">hash_table</span><span class="p">,</span><span class="w"> </span><span class="n">key</span><span class="p">,</span><span class="w"> </span><span class="o">&amp;</span><span class="n">it</span><span class="p">,</span><span class="w"> </span><span class="o">&amp;</span><span class="n">missing</span><span class="p">));</span>
<span class="k">if</span><span class="w"> </span><span class="p">(</span><span class="n">missing</span><span class="p">)</span><span class="w"> </span><span class="p">{</span>
<span class="w">  </span><span class="n"><a href="../manualpages/Sys/PetscInt.html">PetscInt</a></span><span class="w"> </span><span class="n">size</span><span class="p">;</span>

<span class="w">  </span><span class="n"><a href="../manualpages/Sys/PetscCall.html">PetscCall</a></span><span class="p">(</span><span class="n"><a href="../manualpages/PetscH/PetscHMapIGetSize.html">PetscHMapIGetSize</a></span><span class="p">(</span><span class="n">hash_table</span><span class="p">,</span><span class="w"> </span><span class="o">&amp;</span><span class="n">size</span><span class="p">));</span>
<span class="w">  </span><span class="n"><a href="../manualpages/Sys/PetscCall.html">PetscCall</a></span><span class="p">(</span><span class="n"><a href="../manualpages/PetscH/PetscHMapIIterSet.html">PetscHMapIIterSet</a></span><span class="p">(</span><span class="n">hash_table</span><span class="p">,</span><span class="w"> </span><span class="n">it</span><span class="p">,</span><span class="w"> </span><span class="n">size</span><span class="p">));</span>
<span class="p">}</span>
</pre></div>
</div>
</li>
</ol>
<p>Furthermore, users should note that <code class="docutils notranslate"><span class="pre"><a href="../manualpages/PetscH/PetscHMapI.html">PetscHMapI</a></span></code> is based on – and directly <code class="docutils notranslate"><span class="pre">#include</span></code> s – <code class="docutils notranslate"><span class="pre">${PETSC_DIR}/include/petsc/private/khash/khash.h</span></code>. This file contains external source code that is licensed under the MIT license, which is separate from the PETSc license.</p>
</li>
<li><p>Remove undocumented <code class="docutils notranslate"><span class="pre">PETSC_MPI_WIN_FMT</span></code> and <code class="docutils notranslate"><span class="pre">PETSC_MPI_COMM_FMT</span></code>. Users should cast both <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/MPI_Comm.html">MPI_Comm</a></span></code> and <code class="docutils notranslate"><span class="pre">MPI_Win</span></code> to <code class="docutils notranslate"><span class="pre">PETSC_INTPTR_T</span></code> and use the <code class="docutils notranslate"><span class="pre">PETSC_INTPTR_T_FMT</span></code> format specifier instead:</p>
<div class="highlight-c notranslate"><div class="highlight"><pre><span></span><span class="n"><a href="../manualpages/Sys/MPI_Comm.html">MPI_Comm</a></span><span class="w"> </span><span class="n">comm</span><span class="p">;</span>
<span class="n">MPI_Win</span><span class="w">  </span><span class="n">win</span><span class="p">;</span>

<span class="c1">// old</span>
<span class="n"><a href="../manualpages/Sys/PetscCall.html">PetscCall</a></span><span class="p">(</span><span class="n"><a href="../manualpages/Sys/PetscPrintf.html">PetscPrintf</a></span><span class="p">(...,</span><span class="w"> </span><span class="s">&quot;MPI Comm %&quot;</span><span class="w"> </span><span class="n">PETSC_MPI_COMM_FMT</span><span class="p">,</span><span class="w"> </span><span class="n">comm</span><span class="p">));</span>
<span class="n"><a href="../manualpages/Sys/PetscCall.html">PetscCall</a></span><span class="p">(</span><span class="n"><a href="../manualpages/Sys/PetscPrintf.html">PetscPrintf</a></span><span class="p">(...,</span><span class="w"> </span><span class="s">&quot;MPI Window %&quot;</span><span class="w"> </span><span class="n">PETSC_MPI_WIN_FMT</span><span class="p">,</span><span class="w"> </span><span class="n">win</span><span class="p">));</span>

<span class="c1">// new</span>
<span class="n"><a href="../manualpages/Sys/PetscCall.html">PetscCall</a></span><span class="p">(</span><span class="n"><a href="../manualpages/Sys/PetscPrintf.html">PetscPrintf</a></span><span class="p">(...,</span><span class="w"> </span><span class="s">&quot;MPI Comm %&quot;</span><span class="w"> </span><span class="n">PETSC_INTPTR_T_FMT</span><span class="p">,</span><span class="w"> </span><span class="p">(</span><span class="n">PETSC_INTPTR_T</span><span class="p">)</span><span class="n">comm</span><span class="p">));</span>
<span class="n"><a href="../manualpages/Sys/PetscCall.html">PetscCall</a></span><span class="p">(</span><span class="n"><a href="../manualpages/Sys/PetscPrintf.html">PetscPrintf</a></span><span class="p">(...,</span><span class="w"> </span><span class="s">&quot;MPI Window %&quot;</span><span class="w"> </span><span class="n">PETSC_INTPTR_T_FMT</span><span class="p">,</span><span class="w"> </span><span class="p">(</span><span class="n">PETSC_INTPTR_T</span><span class="p">)</span><span class="n">win</span><span class="p">));</span>
</pre></div>
</div>
</li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre">PETSC_NULL</span></code> in favor of <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PETSC_NULLPTR.html">PETSC_NULLPTR</a></span></code> as it does the right thing in both C and C++</p></li>
<li><p>Significantly improve lookup and deletion performance of <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PetscFunctionList.html">PetscFunctionList</a></span></code>. This also improves performance of <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PetscObjectComposeFunction.html">PetscObjectComposeFunction</a>()</span></code> and <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PetscObjectQueryFunction.html">PetscObjectQueryFunction</a>()</span></code>.</p></li>
<li><p>Optionally define <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PetscErrorCode.html">PetscErrorCode</a></span></code> as an <code class="docutils notranslate"><span class="pre">enum</span></code>, and tag it as <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PETSC_NODISCARD.html">PETSC_NODISCARD</a></span></code>. This feature may be enabled by configuring PETSc with <code class="docutils notranslate"><span class="pre">--with-strict-petscerrorcode</span></code> configure option. This feature allows catching the following logical errors at compile-time:</p>
<ol class="arabic simple">
<li><p>Not properly checking the return-code of PETSc calls via <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PetscCall.html">PetscCall</a>()</span></code>. PETSc is left in an inconsistent state when errors are detected and cannot generally recover from them, so is not supported.</p></li>
<li><p>Using the wrong <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PetscCall.html">PetscCall</a>()</span></code> variant, for example using <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PetscCall.html">PetscCall</a>()</span></code> on MPI functions (instead of <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PetscCallMPI.html">PetscCallMPI</a>()</span></code>).</p></li>
<li><p>Returning <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PetscErrorCode.html">PetscErrorCode</a></span></code> from <code class="docutils notranslate"><span class="pre">main()</span></code> instead of <code class="docutils notranslate"><span class="pre">int</span></code>.</p></li>
</ol>
<p>Users should note that this comes with the following additional changes:</p>
<ol class="arabic">
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PetscErrorCode.html">PETSC_SUCCESS</a></span></code> to indicate success, always guaranteed to equal <code class="docutils notranslate"><span class="pre">0</span></code>.</p></li>
<li><p><code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PetscFunctionReturn.html">PetscFunctionReturn</a>(0)</span></code> should be changed to <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PetscFunctionReturn.html">PetscFunctionReturn</a>(<a href="../manualpages/Sys/PetscErrorCode.html">PETSC_SUCCESS</a>)</span></code>. While the original <code class="docutils notranslate"><span class="pre">0</span></code>-form will continue to work in C, it is required for C++.</p></li>
<li><p>Any user-defined macros using boolean short-circuiting to chain multiple calls in the same line, which logically return a <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PetscErrorCode.html">PetscErrorCode</a></span></code>, should now explicitly cast the “result” of the macro with <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PetscErrorCode.html">PetscErrorCode</a></span></code>:</p>
<div class="highlight-c notranslate"><div class="highlight"><pre><span></span><span class="c1">// Both foo() and bar() defined as returning <a href="../manualpages/Sys/PetscErrorCode.html">PetscErrorCode</a></span>
<span class="k">extern</span><span class="w"> </span><span class="n"><a href="../manualpages/Sys/PetscErrorCode.html">PetscErrorCode</a></span><span class="w"> </span><span class="nf">foo</span><span class="p">(</span><span class="kt">int</span><span class="p">);</span>
<span class="k">extern</span><span class="w"> </span><span class="n"><a href="../manualpages/Sys/PetscErrorCode.html">PetscErrorCode</a></span><span class="w"> </span><span class="nf">bar</span><span class="p">(</span><span class="kt">int</span><span class="p">);</span>

<span class="c1">// The following macros logically &quot;return&quot; a <a href="../manualpages/Sys/PetscErrorCode.html">PetscErrorCode</a>, i.e. can</span>
<span class="c1">// be used:</span>
<span class="c1">//</span>
<span class="c1">// <a href="../manualpages/Sys/PetscCall.html">PetscCall</a>(MY_USER_MACRO(a, b));</span>
<span class="c1">//</span>
<span class="c1">// but use boolean short-circuiting to chain the calls together. bar()</span>
<span class="c1">// only executes if foo() returns <a href="../manualpages/Sys/PetscErrorCode.html">PETSC_SUCCESS</a></span>

<span class="c1">// old</span>
<span class="cp">#define MY_USER_MACRO(a, b) (foo(a) || bar(b))</span>

<span class="c1">// new</span>
<span class="cp">#define MY_BETTER_USER_MACRO(a, b) ((<a href="../manualpages/Sys/PetscErrorCode.html">PetscErrorCode</a>)(foo(a) || bar(b)))</span>
</pre></div>
</div>
</li>
</ol>
<p>While currently opt-in, this feature <strong>will be enabled by default in a future release</strong>. Users are highly encourage to enable it and fix any discrepancies before that point. Note that <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PetscErrorCode.html">PETSC_SUCCESS</a></span></code> is defined whether or not the feature is enabled, so users may incrementally update.</p>
</li>
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PetscFFlush.html">PetscFFlush</a>()</span></code></p></li>
<li><p>Soft-deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PetscStrcpy.html">PetscStrcpy</a>()</span></code> and <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PetscStrcat.html">PetscStrcat</a>()</span></code>. No diagnostics will be emitted if these routines are used, but users are highly encouraged to switch to the more secure (and possibly performant) <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PetscStrncpy.html">PetscStrncpy</a>()</span></code> and <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PetscStrlcat.html">PetscStrlcat</a>()</span></code></p></li>
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PETSC_REAL_MIN.html">PETSC_REAL_MIN</a></span></code> for smallest normalized floating point number</p></li>
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Sys/PETSC_ATTRIBUTE_MAY_ALIAS.html">PETSC_ATTRIBUTE_MAY_ALIAS</a></span></code> to inform compilers that a type is not subjected to type-based alias analysis</p></li>
</ul>
<p class="rubric">Event Logging:</p>
<p class="rubric">PetscViewer:</p>
<ul class="simple">
<li><p>The VTK viewers (<code class="docutils notranslate"><span class="pre">.vts</span></code>, <code class="docutils notranslate"><span class="pre">.vtr</span></code>, and <code class="docutils notranslate"><span class="pre">.vtu</span></code>) now use <code class="docutils notranslate"><span class="pre">header_type=&quot;UInt64&quot;</span></code> to enable writing large binary appended blocks</p></li>
</ul>
<p class="rubric">PetscDraw:</p>
<ul class="simple">
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Draw/PetscDrawSetVisible.html">PetscDrawSetVisible</a>()</span></code> to set if the drawing surface (the ‘window’) is visible on its display</p></li>
</ul>
<p class="rubric">AO:</p>
<p class="rubric">IS:</p>
<ul class="simple">
<li><p>Change <code class="docutils notranslate"><span class="pre"><a href="../manualpages/IS/ISDuplicate.html">ISDuplicate</a>()</span></code> to preserve the block size of the input in the output</p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre">ISCompressIndicesSorted()</span></code></p></li>
</ul>
<p class="rubric">VecScatter / PetscSF:</p>
<ul class="simple">
<li><p>Add experimental support in PetscSF for MPICH MPIX_Stream (with MPICH-4.2.0 and higher). One can enable it via <code class="docutils notranslate"><span class="pre">-sf_use_stream_aware_mpi</span></code></p></li>
<li><p>Add an alias option <code class="docutils notranslate"><span class="pre">-sf_use_gpu_aware_mpi</span></code> to <code class="docutils notranslate"><span class="pre">-use_gpu_aware_mpi</span></code></p></li>
<li><p>Remove <code class="docutils notranslate"><span class="pre">SCATTER_LOCAL</span></code> from the enum type since it is not a public value</p></li>
<li><p>Change <code class="docutils notranslate"><span class="pre"><a href="../manualpages/PetscSF/PetscSFConcatenate.html">PetscSFConcatenate</a>()</span></code> to accept <code class="docutils notranslate"><span class="pre"><a href="../manualpages/PetscSF/PetscSFConcatenateRootMode.html">PetscSFConcatenateRootMode</a></span></code> parameter; add option to concatenate root spaces globally</p></li>
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/PetscSF/PetscSFSetGraphFromCoordinates.html">PetscSFSetGraphFromCoordinates</a>()</span></code> to construct a graph from fuzzy matching of coordinates; such as occurs for projections between different dimensions or for overlapping meshes</p></li>
</ul>
<p class="rubric">PF:</p>
<p class="rubric">Vec:</p>
<ul class="simple">
<li><p>Document <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Vec/VecOperation.html">VecOperation</a></span></code></p></li>
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Vec/VecOperation.html">VECOP_SET</a></span></code></p></li>
<li><p>Significantly improve performance of <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Vec/VecMDot.html">VecMDot</a>()</span></code>, <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Vec/VecMAXPY.html">VecMAXPY</a>()</span></code> and <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Vec/VecDotNorm2.html">VecDotNorm2</a>()</span></code> for CUDA and HIP vector types. These routines should be between 2x and 4x faster.</p></li>
<li><p>Enforce the rule that <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Vec/VecAssemblyBegin.html">VecAssemblyBegin</a>()</span></code> and <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Vec/VecAssemblyEnd.html">VecAssemblyEnd</a>()</span></code> must be called on even sequential vectors after calls to <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Vec/VecSetValues.html">VecSetValues</a>()</span></code>. This also applies to assignment of vector entries in petsc4py</p></li>
</ul>
<p class="rubric">PetscSection:</p>
<p class="rubric">PetscPartitioner:</p>
<p class="rubric">Mat:</p>
<ul class="simple">
<li><p><code class="docutils notranslate"><span class="pre"><a href="../manualpages/Mat/MatSetValues.html">MatSetValues</a>()</span></code> and friends will now provide reasonable performance when no preallocation information is provided</p></li>
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Mat/MatEliminateZeros.html">MatEliminateZeros</a>()</span></code></p></li>
<li><p>Improve efficiency of <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Mat/MatConvert.html">MatConvert</a>()</span></code> from <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Mat/MATNORMAL.html">MATNORMAL</a></span></code> to <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Mat/MATHYPRE.html">MATHYPRE</a></span></code></p></li>
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Mat/MatDenseGetArrayAndMemType.html">MatDenseGetArrayAndMemType</a>()</span></code>, <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Mat/MatDenseRestoreArrayAndMemType.html">MatDenseRestoreArrayAndMemType</a>()</span></code>, <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Mat/MatDenseGetArrayReadAndMemType.html">MatDenseGetArrayReadAndMemType</a>()</span></code>, <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Mat/MatDenseRestoreArrayReadAndMemType.html">MatDenseRestoreArrayReadAndMemType</a>()</span></code>, <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Mat/MatDenseGetArrayWriteAndMemType.html">MatDenseGetArrayWriteAndMemType</a>()</span></code> and <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Mat/MatDenseRestoreArrayWriteAndMemType.html">MatDenseRestoreArrayWriteAndMemType</a>()</span></code> to return the array and memory type of a dense matrix</p></li>
<li><p>Deprecate all MatPreallocate* routines. These are no longer needed since non-preallocated matrices will now be as fast as using them</p></li>
<li><p>Significantly improve performance of <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Mat/MatScale.html">MatScale</a>()</span></code> and <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Mat/MatAXPY.html">MatAXPY</a>()</span></code> for <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Mat/MATDENSECUDA.html">MATDENSECUDA</a></span></code> and <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Mat/MATDENSEHIP.html">MATDENSEHIP</a></span></code> in the case where the leading dimension is greater than the number of columns/rows. This situation arises when using e.g. sub-matrices. These routines should be between 3x and 4x faster</p></li>
</ul>
<p class="rubric">MatCoarsen:</p>
<p class="rubric">PC:</p>
<ul class="simple">
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/PC/PCHPDDMSetSTShareSubKSP.html">PCHPDDMSetSTShareSubKSP</a>()</span></code></p></li>
</ul>
<p class="rubric">KSP:</p>
<ul class="simple">
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/KSP/KSPMonitorDynamicToleranceCreate.html">KSPMonitorDynamicToleranceCreate</a>()</span></code> and <code class="docutils notranslate"><span class="pre"><a href="../manualpages/KSP/KSPMonitorDynamicToleranceSetCoefficient.html">KSPMonitorDynamicToleranceSetCoefficient</a>()</span></code></p></li>
<li><p>Change <code class="docutils notranslate"><span class="pre">-sub_ksp_dynamic_tolerance_param</span></code> to <code class="docutils notranslate"><span class="pre">-sub_ksp_dynamic_tolerance</span></code></p></li>
<li><p>Add support for <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Mat/MATAIJCUSPARSE.html">MATAIJCUSPARSE</a></span></code> and <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Vec/VECCUDA.html">VECCUDA</a></span></code> to <code class="docutils notranslate"><span class="pre"><a href="../manualpages/KSP/KSPHPDDM.html">KSPHPDDM</a></span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre">KSP_CONVERGED_CG_NEG_CURVE</span></code> in favor of <code class="docutils notranslate"><span class="pre"><a href="../manualpages/KSP/KSPConvergedReason.html">KSP_CONVERGED_NEG_CURVE</a></span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre">KSP_CONVERGED_CG_CONSTRAINED</span></code> in favor of <code class="docutils notranslate"><span class="pre"><a href="../manualpages/KSP/KSPConvergedReason.html">KSP_CONVERGED_STEP_LENGTH</a></span></code></p></li>
<li><p>Add fourth kind Chebyshev polynomials; see <code class="docutils notranslate"><span class="pre"><a href="../manualpages/KSP/KSPChebyshevKind.html">KSPChebyshevKind</a></span></code> and <code class="docutils notranslate"><span class="pre"><a href="../manualpages/KSP/KSPChebyshevSetKind.html">KSPChebyshevSetKind</a>()</span></code></p></li>
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/KSP/KSPSetConvergedNegativeCurvature.html">KSPSetConvergedNegativeCurvature</a>()</span></code> to declare convergence if negative curvature is detected by the Krylov solver</p></li>
<li><p>Add MINRES-QLP, available via <code class="docutils notranslate"><span class="pre"><a href="../manualpages/KSP/KSPMINRESSetUseQLP.html">KSPMINRESSetUseQLP</a>()</span></code> or the command line <code class="docutils notranslate"><span class="pre">-ksp_minres_qlp</span></code></p></li>
<li><p>Replace old MINRES implementation</p></li>
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/KSP/KSPMatSolveTranspose.html">KSPMatSolveTranspose</a>()</span></code></p></li>
</ul>
<p class="rubric">SNES:</p>
<ul class="simple">
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/SNES/SNESPruneJacobianColor.html">SNESPruneJacobianColor</a>()</span></code> to improve the MFFD coloring</p></li>
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/SNES/SNESVIGetVariableBounds.html">SNESVIGetVariableBounds</a>()</span></code> to access variable bounds of a <code class="docutils notranslate"><span class="pre">SNESVI</span></code></p></li>
</ul>
<p class="rubric">SNESLineSearch:</p>
<p class="rubric">TS:</p>
<ul class="simple">
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/TS/TSPruneIJacobianColor.html">TSPruneIJacobianColor</a>()</span></code> to improve the MFFD coloring</p></li>
<li><p>Add argument to <code class="docutils notranslate"><span class="pre">TSMonitorSPCtxCreate()</span></code> to enable multispecies plots</p></li>
<li><p>Add <code class="docutils notranslate"><span class="pre">TSMonitorHGCtxCreate()</span></code>, <code class="docutils notranslate"><span class="pre">TSMonitorHGCtxDestroy()</span></code>, <code class="docutils notranslate"><span class="pre"><a href="../manualpages/TS/TSMonitorHGSwarmSolution.html">TSMonitorHGSwarmSolution</a>()</span></code> to support histogram plots of particle swarms</p></li>
<li><p>Add support for first-order adjoint calculation for <code class="docutils notranslate"><span class="pre"><a href="../manualpages/TS/TSARKIMEX.html">TSARKIMEX</a></span></code></p></li>
</ul>
<p class="rubric">TAO:</p>
<p class="rubric">DM/DA:</p>
<ul class="simple">
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMLabel/DMLabelGetType.html">DMLabelGetType</a>()</span></code>, <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMLabel/DMLabelSetType.html">DMLabelSetType</a>()</span></code>, <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMLabel/DMLabelSetUp.html">DMLabelSetUp</a>()</span></code>, <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMLabel/DMLabelRegister.html">DMLabelRegister</a>()</span></code>, <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMLabel/DMLabelRegisterAll.html">DMLabelRegisterAll</a>()</span></code>, <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMLabel/DMLabelRegisterDestroy.html">DMLabelRegisterDestroy</a>()</span></code></p></li>
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMLabel/DMLabelEphemeralGetLabel.html">DMLabelEphemeralGetLabel</a>()</span></code>, <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMLabel/DMLabelEphemeralSetLabel.html">DMLabelEphemeralSetLabel</a>()</span></code>, <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMLabel/DMLabelEphemeralGetTransform.html">DMLabelEphemeralGetTransform</a>()</span></code>, <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMLabel/DMLabelEphemeralSetTransform.html">DMLabelEphemeralSetTransform</a>()</span></code></p></li>
<li><p>Now <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DM/DMGetCellDS.html">DMGetCellDS</a>()</span></code>, <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DM/DMGetRegionDS.html">DMGetRegionDS</a>()</span></code>, <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DM/DMSetRegionDS.html">DMSetRegionDS</a>()</span></code>, <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DM/DMGetRegionNumDS.html">DMGetRegionNumDS</a>()</span></code>, <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DM/DMSetRegionNumDS.html">DMSetRegionNumDS</a>()</span></code> can also set and return an input DS</p></li>
</ul>
<p class="rubric">DMSwarm:</p>
<ul class="simple">
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMSwarm/DMSwarmGetMigrateType.html">DMSwarmGetMigrateType</a>()</span></code> and <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMSwarm/DMSwarmSetMigrateType.html">DMSwarmSetMigrateType</a>()</span></code></p></li>
</ul>
<p class="rubric">DMPlex:</p>
<ul class="simple">
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMPlex/DMPlexGetOrientedCone.html">DMPlexGetOrientedCone</a>()</span></code> and <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMPlex/DMPlexRestoreOrientedCone.html">DMPlexRestoreOrientedCone</a>()</span></code> to return both cone and orientation together</p></li>
<li><p>Add <code class="docutils notranslate"><span class="pre">DMPlexTransformGetChart()</span></code>, <code class="docutils notranslate"><span class="pre">DMPlexTransformGetCellType()</span></code>, <code class="docutils notranslate"><span class="pre">DMPlexTransformGetDepth()</span></code>, <code class="docutils notranslate"><span class="pre">DMPlexTransformGetDepthStratum()</span></code>, <code class="docutils notranslate"><span class="pre">DMPlexTransformGetConeSize()</span></code> to enable ephemeral meshes</p></li>
<li><p>Remove <code class="docutils notranslate"><span class="pre">DMPlexAddConeSize()</span></code></p></li>
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMPlex/DMPlexCreateEphemeral.html">DMPlexCreateEphemeral</a>()</span></code></p></li>
<li><p>Both <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DM/DMView.html">DMView</a>()</span></code> and <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DM/DMLoad.html">DMLoad</a>()</span></code> now support parallel I/O with a new HDF5 format (see the manual for details)</p></li>
<li><p>Remove <code class="docutils notranslate"><span class="pre">DMPlexComputeGeometryFEM()</span></code> since it was broken</p></li>
<li><p>Change <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMPlex/DMPlexMarkBoundaryFaces.html">DMPlexMarkBoundaryFaces</a>()</span></code> to avoid marking faces on the parallel boundary. To get the prior behavior, you can temporarily remove the <code class="docutils notranslate"><span class="pre">PointSF</span></code> from the <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DM/DM.html">DM</a></span></code></p></li>
<li><p>Add <code class="docutils notranslate"><span class="pre">-dm_localize_height</span></code> to localize edges and faces</p></li>
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMPlex/DMPlexCreateHypercubicMesh.html">DMPlexCreateHypercubicMesh</a>()</span></code> to create hypercubic meshes needed for QCD</p></li>
<li><p>Add <code class="docutils notranslate"><span class="pre">-dm_plex_shape</span> <span class="pre">zbox</span></code> option to <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DM/DMSetFromOptions.html">DMSetFromOptions</a>()</span></code> to generated born-parallel meshes in Z-ordering (a space-filling curve). This may be used as-is with <code class="docutils notranslate"><span class="pre">-petscpartitioner_type</span> <span class="pre">simple</span></code> or redistributed using <code class="docutils notranslate"><span class="pre">-petscpartitioner_type</span> <span class="pre">parmetis</span></code> (or <code class="docutils notranslate"><span class="pre">ptscotch</span></code>, etc.), which is more scalable than creating a serial mesh to partition and distribute.</p></li>
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMPlex/DMPlexSetIsoperiodicFaceSF.html">DMPlexSetIsoperiodicFaceSF</a>()</span></code> to wrap a non-periodic mesh into periodic while preserving the local point representation for both donor and image sheet. This is supported with <code class="docutils notranslate"><span class="pre">zbox</span></code> above, and allows single-element periodicity.</p></li>
<li><p>Now <code class="docutils notranslate"><span class="pre">DMPlexGetCompressedClosure()</span></code> also takes the point orientation</p></li>
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMPlex/DMPlexReorderCohesiveSupports.html">DMPlexReorderCohesiveSupports</a>()</span></code></p></li>
</ul>
<p class="rubric">FE/FV:</p>
<ul class="simple">
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMPlex/DMPlexGetLocalOffsetsSupport.html">DMPlexGetLocalOffsetsSupport</a>()</span></code> for interaction with libCEED for FV</p></li>
<li><p>Now <code class="docutils notranslate"><span class="pre"><a href="../manualpages/FE/PetscFEIntegrateHybridResidual.html">PetscFEIntegrateHybridResidual</a>()</span></code> and <code class="docutils notranslate"><span class="pre"><a href="../manualpages/FE/PetscFEIntegrateHybridJacobian.html">PetscFEIntegrateHybridJacobian</a>()</span></code> also take the input DS</p></li>
</ul>
<p class="rubric">DMNetwork:</p>
<ul class="simple">
<li><p>Add DMNetworkGetNumVertices to retrieve the local and global number of vertices in DMNetwork</p></li>
<li><p>Add DMNetworkGetNumEdges to retrieve the local and global number of edges in DMNetwork</p></li>
<li><p>Add the ability to use <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DM/DMView.html">DMView</a>()</span></code> on a DMNetwork with a PetscViewer with format <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Viewer/PetscViewerFormat.html">PETSC_VIEWER_ASCII_CSV</a></span></code></p></li>
<li><p>Add the ability to use <code class="docutils notranslate"><span class="pre">-dmnetwork_view</span> <span class="pre">draw</span></code> and <code class="docutils notranslate"><span class="pre">-dmnetwork_view_distributed</span> <span class="pre">draw</span></code> to visualize a DMNetwork with an associated coordinate DM. This currently requires the configured Python environment to have <code class="docutils notranslate"><span class="pre">matplotlib</span></code> and <code class="docutils notranslate"><span class="pre">pandas</span></code> installed</p></li>
</ul>
<p class="rubric">DMStag:</p>
<p class="rubric">DT:</p>
<ul class="simple">
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DT/PetscDTCreateDefaultQuadrature.html">PetscDTCreateDefaultQuadrature</a>()</span></code></p></li>
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DT/PetscQuadratureComputePermutations.html">PetscQuadratureComputePermutations</a>()</span></code> to compute the quadrature permutation corresponding to a k-cell orientation and <code class="docutils notranslate"><span class="pre">PetscDSPermuteQuadPoint()</span></code></p></li>
<li><p>Add <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DT/PetscQuadratureGetCellType.html">PetscQuadratureGetCellType</a>()</span></code> and <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DT/PetscQuadratureSetCellType.html">PetscQuadratureSetCellType</a>()</span></code></p></li>
<li><p>Add <code class="docutils notranslate"><span class="pre">PetscDSCopy()</span></code></p></li>
</ul>
<p class="rubric">Fortran:</p>
<ul class="simple">
<li><p>Add <code class="docutils notranslate"><span class="pre">MatMPIAIJGetSeqAIJF90()</span></code>, <code class="docutils notranslate"><span class="pre">MatMPIAIJRestoreSeqAIJF90()</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/IS/ISGetIndices.html">ISGetIndices</a>()</span></code> in favor of <code class="docutils notranslate"><span class="pre">ISGetIndicesF90()</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/IS/ISRestoreIndices.html">ISRestoreIndices</a>()</span></code> in favor of <code class="docutils notranslate"><span class="pre">ISRestoreIndicesF90()</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/IS/ISLocalToGlobalMappingGetIndices.html">ISLocalToGlobalMappingGetIndices</a>()</span></code> in favor of <code class="docutils notranslate"><span class="pre">ISLocalToGlobalMappingGetIndicesF90()</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/IS/ISLocalToGlobalMappingRestoreIndices.html">ISLocalToGlobalMappingRestoreIndices</a>()</span></code> in favor of <code class="docutils notranslate"><span class="pre">ISLocalToGlobalMappingRestoreIndicesF90()</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Vec/VecGetArray.html">VecGetArray</a>()</span></code> in favor of <code class="docutils notranslate"><span class="pre">VecGetArrayF90()</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Vec/VecRestoreArray.html">VecRestoreArray</a>()</span></code> in favor of <code class="docutils notranslate"><span class="pre">VecRestoreArrayF90()</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Vec/VecGetArrayRead.html">VecGetArrayRead</a>()</span></code> in favor of <code class="docutils notranslate"><span class="pre">VecGetArrayReadF90()</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Vec/VecRestoreArrayRead.html">VecRestoreArrayRead</a>()</span></code> in favor of <code class="docutils notranslate"><span class="pre">VecRestoreArrayReadF90()</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Vec/VecDuplicateVecs.html">VecDuplicateVecs</a>()</span></code> in favor of <code class="docutils notranslate"><span class="pre">VecDuplicateVecsF90()</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Vec/VecDestroyVecs.html">VecDestroyVecs</a>()</span></code> in favor of <code class="docutils notranslate"><span class="pre">VecDestroyVecsF90()</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMDA/DMDAVecGetArray.html">DMDAVecGetArray</a>()</span></code> in favor of <code class="docutils notranslate"><span class="pre">DMDAVecGetArrayF90()</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMDA/DMDAVecRestoreArray.html">DMDAVecRestoreArray</a>()</span></code> in favor of <code class="docutils notranslate"><span class="pre">DMDAVecRestoreArrayF90()</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMDA/DMDAVecGetArrayRead.html">DMDAVecGetArrayRead</a>()</span></code> in favor of <code class="docutils notranslate"><span class="pre">DMDAVecGetArrayReadF90()</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMDA/DMDAVecRestoreArrayRead.html">DMDAVecRestoreArrayRead</a>()</span></code> in favor of <code class="docutils notranslate"><span class="pre">DMDAVecRestoreArrayReadF90()</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMDA/DMDAVecGetArrayWrite.html">DMDAVecGetArrayWrite</a>()</span></code> in favor of <code class="docutils notranslate"><span class="pre">DMDAVecGetArrayWriteF90()</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/DMDA/DMDAVecRestoreArrayWrite.html">DMDAVecRestoreArrayWrite</a>()</span></code> in favor of <code class="docutils notranslate"><span class="pre">DMDAVecRestoreArrayWriteF90()</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Mat/MatGetRowIJ.html">MatGetRowIJ</a>()</span></code> in favor of <code class="docutils notranslate"><span class="pre">MatGetRowIJF90()</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Mat/MatRestoreRowIJ.html">MatRestoreRowIJ</a>()</span></code> in favor of <code class="docutils notranslate"><span class="pre">MatRestoreRowIJF90()</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Mat/MatSeqAIJGetArray.html">MatSeqAIJGetArray</a>()</span></code> in favor of <code class="docutils notranslate"><span class="pre">MatSeqAIJGetArrayF90()</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Mat/MatSeqAIJRestoreArray.html">MatSeqAIJRestoreArray</a>()</span></code> in favor of <code class="docutils notranslate"><span class="pre">MatSeqAIJRestoreArrayF90()</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Mat/MatMPIAIJGetSeqAIJ.html">MatMPIAIJGetSeqAIJ</a>()</span></code> in favor of <code class="docutils notranslate"><span class="pre">MatMPIAIJGetSeqAIJF90()</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Mat/MatDenseGetArray.html">MatDenseGetArray</a>()</span></code> in favor of <code class="docutils notranslate"><span class="pre">MatDenseGetArrayF90()</span></code></p></li>
<li><p>Deprecate <code class="docutils notranslate"><span class="pre"><a href="../manualpages/Mat/MatDenseRestoreArray.html">MatDenseRestoreArray</a>()</span></code> in favor of <code class="docutils notranslate"><span class="pre">MatDenseRestoreArrayF90()</span></code></p></li>
</ul>
</section>


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