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#!/usr/bin/env python3
"""
PETSc: Portable, Extensible Toolkit for Scientific Computation
==============================================================
The Portable, Extensible Toolkit for Scientific Computation (PETSc),
is a suite of data structures and routines for the scalable (parallel)
solution of scientific applications modeled by partial differential
equations. It employs the Message Passing Interface (MPI) standard for
all message-passing communication.
.. note::
To install the ``PETSc`` and ``petsc4py`` packages use::
$ python -m pip install numpy
$ python -m pip install petsc petsc4py
.. tip::
You can also install the in-development versions with::
$ python -m pip install cython numpy
$ python -m pip install --no-deps https://gitlab.com/petsc/petsc/-/archive/main/petsc-main.tar.gz
Provide any ``PETSc`` ``./configure`` options using the environmental variable ``PETSC_CONFIGURE_OPTIONS``.
Do not use the ``PETSc`` ``./configure`` options ``--with-cc``, ``--with-cxx``, ``--with-fc``, or ``--with-mpi-dir``.
Compilers are detected from (in order): 1) the environmental variables ``MPICC``, ``MPICXX``, ``MPIFORT``,
or 2) from running the ``which mpicc``, ``which mpicxx``, ``which mpifort`` commands.
"""
import re
import os
import sys
import shlex
import shutil
from setuptools import setup
from setuptools.command.install import install as _install
try:
from setuptools.command.bdist_wheel import bdist_wheel as _bdist_wheel
except ImportError:
from wheel.bdist_wheel import bdist_wheel as _bdist_wheel
from distutils import log
init_py = """\
# Author: PETSc Team
# Contact: petsc-maint@mcs.anl.gov
def get_petsc_dir():
import os
return os.path.dirname(__file__)
def get_config():
conf = {}
conf['PETSC_DIR'] = get_petsc_dir()
return conf
"""
main_py = """\
# Author: PETSc Team
# Contact: petsc-maint@mcs.anl.gov
if __name__ == "__main__":
import sys
if "--prefix" in sys.argv:
from . import get_petsc_dir
print(get_petsc_dir())
del get_petsc_dir
del sys
"""
metadata = {
'provides' : ['petsc'],
'zip_safe' : False,
}
CONFIGURE_OPTIONS = []
def bootstrap():
# Set PETSC_DIR and PETSC_ARCH
PETSC_DIR = os.path.abspath(os.getcwd())
PETSC_ARCH = 'arch-python'
os.environ['PETSC_DIR'] = PETSC_DIR
os.environ['PETSC_ARCH'] = PETSC_ARCH
sys.path.insert(0, os.path.join(PETSC_DIR, 'config'))
sys.path.insert(0, os.path.join(PETSC_DIR, 'lib','petsc','conf'))
# Generate package __init__.py and __main__.py files
pkgdir = os.path.join('config', 'pypi')
os.makedirs(pkgdir, exist_ok=True)
for pyfile, contents in (
('__init__.py', init_py),
('__main__.py', main_py),
):
with open(os.path.join(pkgdir, pyfile), 'w') as fh:
fh.write(contents)
# Configure options
options = os.environ.get('PETSC_CONFIGURE_OPTIONS', '')
CONFIGURE_OPTIONS.extend(shlex.split(options))
for i in CONFIGURE_OPTIONS:
if i.startswith('--with-mpi-dir='):
raise RuntimeError("Do not use --with-mpi-dir, use the environmental variables MPICC, MPICXX, MPIFORT")
if i.startswith('--with-cc='):
raise RuntimeError("Do not use --with-cc, use the environmental variable MPICC")
if i.startswith('--with-cxx=') and i != "--with-cxx=0":
raise RuntimeError("Do not use --with-cxx, use the environmental variable MPICXX")
if i.startswith('--with-fc=') and i != "--with-fc=0":
raise RuntimeError("Do not use --with-fc, use the environmental variable MPIFORT")
def config(prefix, dry_run=False):
log.info('PETSc: configure')
options = [
'--prefix=' + prefix,
'PETSC_ARCH='+os.environ['PETSC_ARCH'],
'--with-shared-libraries=1',
'--with-c2html=0', # not needed
]
if '--with-fc=0' in CONFIGURE_OPTIONS:
options.append('--with-sowing=0')
if '--with-debugging=1' not in CONFIGURE_OPTIONS:
options.append('--with-debugging=0')
if '--with-mpi=0' not in CONFIGURE_OPTIONS:
mpicc = os.environ.get('MPICC') or shutil.which('mpicc')
mpicxx = os.environ.get('MPICXX') or shutil.which('mpicxx')
mpifort = (
os.environ.get('MPIFORT')
or os.environ.get('MPIF90')
or shutil.which('mpifort')
or shutil.which('mpif90')
)
if mpicc:
options.append('--with-cc='+mpicc)
if '--with-cxx=0' not in CONFIGURE_OPTIONS:
if mpicxx:
options.append('--with-cxx='+mpicxx)
else:
options.append('--with-cxx=0')
if '--with-fc=0' not in CONFIGURE_OPTIONS:
if mpifort:
options.append('--with-fc='+mpifort)
else:
options.append('--with-fc=0')
options.append('--with-sowing=0')
else:
options.append('--with-mpi=0')
options.extend(CONFIGURE_OPTIONS)
#
log.info('configure options:')
for opt in options:
log.info(' '*4 + opt)
# Run PETSc configure
if dry_run:
return
use_config_py = False
if use_config_py:
import configure
configure.petsc_configure(options)
import logger
logger.Logger.defaultLog = None
else:
python = sys.executable
command = [python, './configure'] + options
status = os.system(" ".join(command))
if status != 0:
raise RuntimeError(status)
# Fix PETSc configuration
using_build_backend = any(
os.environ.get(prefix + '_BUILD_BACKEND')
for prefix in ('_PYPROJECT_HOOKS', 'PEP517')
)
if using_build_backend:
pdir = os.environ['PETSC_DIR']
parch = os.environ['PETSC_ARCH']
include = os.path.join(pdir, parch, 'include')
for filename in (
'petscconf.h',
'petscconfiginfo.h',
'petscmachineinfo.h',
):
filename = os.path.join(include, filename)
with open(filename, 'r') as old_fh:
contents = old_fh.read()
contents = contents.replace(prefix, '${PETSC_DIR}')
contents = re.sub(
r'^(#define PETSC_PYTHON_EXE) "(.*)"$',
r'\1 "python%d"' % sys.version_info[0],
contents, flags=re.MULTILINE,
)
with open(filename, 'w') as new_fh:
new_fh.write(contents)
def build(dry_run=False):
log.info('PETSc: build')
# Run PETSc build
if dry_run:
return
use_builder_py = False
if use_builder_py:
import builder
builder.PETScMaker().run()
import logger
logger.Logger.defaultLog = None
else:
make = shutil.which('make')
command = [make, 'all']
status = os.system(" ".join(command))
if status != 0:
raise RuntimeError(status)
def install(dry_run=False):
log.info('PETSc: install')
# Run PETSc installer
if dry_run:
return
use_install_py = False
if use_install_py:
import install
install.Installer().run()
import logger
logger.Logger.defaultLog = None
else:
make = shutil.which('make')
command = [make, 'install']
status = os.system(" ".join(command))
if status != 0:
raise RuntimeError(status)
class context(object):
def __init__(self):
self.sys_argv = sys.argv[:]
self.wdir = os.getcwd()
def enter(self):
del sys.argv[1:]
pdir = os.environ['PETSC_DIR']
os.chdir(pdir)
return self
def exit(self):
sys.argv[:] = self.sys_argv
os.chdir(self.wdir)
class cmd_install(_install):
def initialize_options(self):
_install.initialize_options(self)
def finalize_options(self):
_install.finalize_options(self)
self.install_lib = self.install_platlib
self.install_libbase = self.install_lib
self.old_and_unmanageable = True
def run(self):
root_dir = os.path.abspath(self.install_lib)
prefix = os.path.join(root_dir, 'petsc')
#
ctx = context().enter()
try:
config(prefix, self.dry_run)
build(self.dry_run)
install(self.dry_run)
finally:
ctx.exit()
#
self.outputs = []
for dirpath, _, filenames in os.walk(prefix):
for fn in filenames:
self.outputs.append(os.path.join(dirpath, fn))
#
_install.run(self)
def get_outputs(self):
outputs = getattr(self, 'outputs', [])
outputs += _install.get_outputs(self)
return outputs
class cmd_bdist_wheel(_bdist_wheel):
def finalize_options(self):
super().finalize_options()
self.root_is_pure = False
self.build_number = None
# self.keep_temp = True
def get_tag(self):
plat_tag = super().get_tag()[-1]
return (self.python_tag, "none", plat_tag)
def version():
version_re = {
'major' : re.compile(r"#define\s+PETSC_VERSION_MAJOR\s+(\d+)"),
'minor' : re.compile(r"#define\s+PETSC_VERSION_MINOR\s+(\d+)"),
'micro' : re.compile(r"#define\s+PETSC_VERSION_SUBMINOR\s+(\d+)"),
'release': re.compile(r"#define\s+PETSC_VERSION_RELEASE\s+([-]*\d+)"),
}
petscversion_h = os.path.join('include','petscversion.h')
data = open(petscversion_h, 'r').read()
major = int(version_re['major'].search(data).groups()[0])
minor = int(version_re['minor'].search(data).groups()[0])
micro = int(version_re['micro'].search(data).groups()[0])
release = int(version_re['release'].search(data).groups()[0])
if release:
v = "%d.%d.%d" % (major, minor, micro)
else:
v = "%d.%d.0.dev%d" % (major, minor+1, 0)
return v
def tarball():
VERSION = version()
if '.dev' in VERSION:
return None
return ('https://web.cels.anl.gov/projects/petsc/download/release-snapshots/'
'petsc-%s.tar.gz#egg=petsc-%s' % (VERSION, VERSION))
description = __doc__.split('\n')[1:-1]
del description[1:3]
classifiers = """
Development Status :: 5 - Production/Stable
Intended Audience :: Developers
Intended Audience :: Science/Research
Operating System :: POSIX
Programming Language :: C
Programming Language :: C++
Programming Language :: Fortran
Programming Language :: Python
Programming Language :: Python :: 3
Topic :: Scientific/Engineering
Topic :: Software Development :: Libraries
"""
bootstrap()
setup(
name='petsc',
version=version(),
description=description.pop(0),
long_description='\n'.join(description),
long_description_content_type='text/x-rst',
classifiers=classifiers.split('\n')[1:-1],
keywords = ['PETSc', 'MPI'],
platforms=['POSIX'],
license='BSD-2-Clause',
url='https://petsc.org/',
download_url=tarball(),
author='PETSc Team',
author_email='petsc-maint@mcs.anl.gov',
maintainer='Lisandro Dalcin',
maintainer_email='dalcinl@gmail.com',
packages=['petsc'],
package_dir= {'petsc': 'config/pypi'},
cmdclass={
'install': cmd_install,
'bdist_wheel': cmd_bdist_wheel,
},
**metadata
)
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