File: blosum50.cmp

package info (click to toggle)
pftools 3.2.12-2
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 92,208 kB
  • sloc: ansic: 17,779; fortran: 12,000; perl: 2,956; sh: 232; makefile: 29; f90: 3
file content (36 lines) | stat: -rw-r--r-- 2,961 bytes parent folder | download | duplicates (5)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
#  Matrix made by matblas from blosum50.iij
#  * column uses minimum score
#  BLOSUM Clustered Scoring Matrix in 1/3 Bit Units
#  Blocks Database = /data/blocks_5.0/blocks.dat
#  Cluster Percentage: >= 50
#  Entropy =   0.4808, Expected =  -0.3573
# 
#  mean= -1.0616 , stdev=  3.2555
# 
  A    B    C    D    E     F    G    H    I    K     L    M    N    P    Q     R    S    T    V    W     Y    Z  ..
 5.0 -2.0 -1.0 -2.0 -1.0  -3.0  0.0 -2.0 -1.0 -1.0  -2.0 -1.0 -1.0 -1.0 -1.0  -2.0  1.0  0.0  0.0 -3.0  -2.0 -1.0 A
      5.0 -3.0  5.0  1.0  -4.0 -1.0  0.0 -4.0  0.0  -4.0 -3.0  4.0 -2.0  0.0  -1.0  0.0  0.0 -4.0 -5.0  -3.0  2.0 B
          13.0 -4.0 -3.0  -2.0 -3.0 -3.0 -2.0 -3.0  -2.0 -2.0 -2.0 -4.0 -3.0  -4.0 -1.0 -1.0 -1.0 -5.0  -3.0 -3.0 C
                8.0  2.0  -5.0 -1.0 -1.0 -4.0 -1.0  -4.0 -4.0  2.0 -1.0  0.0  -2.0  0.0 -1.0 -4.0 -5.0  -3.0  1.0 D
                     6.0  -3.0 -3.0  0.0 -4.0  1.0  -3.0 -2.0  0.0 -1.0  2.0   0.0 -1.0 -1.0 -3.0 -3.0  -2.0  5.0 E

                           8.0 -4.0 -1.0  0.0 -4.0   1.0  0.0 -4.0 -4.0 -4.0  -3.0 -3.0 -2.0 -1.0  1.0   4.0 -4.0 F
                                8.0 -2.0 -4.0 -2.0  -4.0 -3.0  0.0 -2.0 -2.0  -3.0  0.0 -2.0 -4.0 -3.0  -3.0 -2.0 G
                                    10.0 -4.0  0.0  -3.0 -1.0  1.0 -2.0  1.0   0.0 -1.0 -2.0 -4.0 -3.0   2.0  0.0 H
                                          5.0 -3.0   2.0  2.0 -3.0 -3.0 -3.0  -4.0 -3.0 -1.0  4.0 -3.0  -1.0 -3.0 I
                                               6.0  -3.0 -2.0  0.0 -1.0  2.0   3.0  0.0 -1.0 -3.0 -3.0  -2.0  1.0 K

                                                     5.0  3.0 -4.0 -4.0 -2.0  -3.0 -3.0 -1.0  1.0 -2.0  -1.0 -3.0 L
                                                          7.0 -2.0 -3.0  0.0  -2.0 -2.0 -1.0  1.0 -1.0   0.0 -1.0 M
                                                               7.0 -2.0  0.0  -1.0  1.0  0.0 -3.0 -4.0  -2.0  0.0 N
                                                                   10.0 -1.0  -3.0 -1.0 -1.0 -3.0 -4.0  -3.0 -1.0 P
                                                                         7.0   1.0  0.0 -1.0 -3.0 -1.0  -1.0  4.0 Q

                                                                               7.0 -1.0 -1.0 -3.0 -3.0  -1.0  0.0 R
                                                                                    5.0  2.0 -2.0 -4.0  -2.0  0.0 S
                                                                                         5.0  0.0 -3.0  -2.0 -1.0 T
                                                                                              5.0 -3.0  -1.0 -3.0 V
                                                                                                  15.0   2.0 -2.0 W

                                                                                                         8.0 -2.0 Y
                                                                                                              5.0 Z