1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
|
#
# This matrix was produced by "pam" Version 1.0.6 [28-Jul-93]
#
# PAM 120 substitution matrix, scale = ln(2)/2 = 0.346574
#
# Expected score = -1.64, Entropy = 0.979 bits
#
# Lowest score = -8, Highest score = 12
#
#
# mean= -1.5644 , stdev= 3.8384
#
A B C D E F G H I K L M N P Q R S T V W Y Z ..
3.0 0.0 -3.0 0.0 0.0 -4.0 1.0 -3.0 -1.0 -2.0 -3.0 -2.0 -1.0 1.0 -1.0 -3.0 1.0 1.0 0.0 -7.0 -4.0 -1.0 A
4.0 -6.0 4.0 3.0 -5.0 0.0 1.0 -3.0 0.0 -4.0 -4.0 3.0 -2.0 0.0 -2.0 0.0 0.0 -3.0 -6.0 -3.0 2.0 B
9.0 -7.0 -7.0 -6.0 -4.0 -4.0 -3.0 -7.0 -7.0 -6.0 -5.0 -4.0 -7.0 -4.0 0.0 -3.0 -3.0 -8.0 -1.0 -7.0 C
5.0 3.0 -7.0 0.0 0.0 -3.0 -1.0 -5.0 -4.0 2.0 -3.0 1.0 -3.0 0.0 -1.0 -3.0 -8.0 -5.0 3.0 D
5.0 -7.0 -1.0 -1.0 -3.0 -1.0 -4.0 -3.0 1.0 -2.0 2.0 -3.0 -1.0 -2.0 -3.0 -8.0 -5.0 4.0 E
8.0 -5.0 -3.0 0.0 -7.0 0.0 -1.0 -4.0 -5.0 -6.0 -5.0 -3.0 -4.0 -3.0 -1.0 4.0 -6.0 F
5.0 -4.0 -4.0 -3.0 -5.0 -4.0 0.0 -2.0 -3.0 -4.0 1.0 -1.0 -2.0 -8.0 -6.0 -2.0 G
7.0 -4.0 -2.0 -3.0 -4.0 2.0 -1.0 3.0 1.0 -2.0 -3.0 -3.0 -3.0 -1.0 1.0 H
6.0 -3.0 1.0 1.0 -2.0 -3.0 -3.0 -2.0 -2.0 0.0 3.0 -6.0 -2.0 -3.0 I
5.0 -4.0 0.0 1.0 -2.0 0.0 2.0 -1.0 -1.0 -4.0 -5.0 -5.0 -1.0 K
5.0 3.0 -4.0 -3.0 -2.0 -4.0 -4.0 -3.0 1.0 -3.0 -2.0 -3.0 L
8.0 -3.0 -3.0 -1.0 -1.0 -2.0 -1.0 1.0 -6.0 -4.0 -2.0 M
4.0 -2.0 0.0 -1.0 1.0 0.0 -3.0 -4.0 -2.0 0.0 N
6.0 0.0 -1.0 1.0 -1.0 -2.0 -7.0 -6.0 -1.0 P
6.0 1.0 -2.0 -2.0 -3.0 -6.0 -5.0 4.0 Q
6.0 -1.0 -2.0 -3.0 1.0 -5.0 -1.0 R
3.0 2.0 -2.0 -2.0 -3.0 -1.0 S
4.0 0.0 -6.0 -3.0 -2.0 T
5.0 -8.0 -3.0 -3.0 V
12.0 -2.0 -7.0 W
8.0 -5.0 Y
4.0 Z
|
