1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
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#
# This matrix was produced by "pam" Version 1.0.7 [01-Feb-98]
# using Dayhoff et al. (1978) mutability data.
#
# PAM 40 substitution matrix, scale = ln(2)/2 = 0.346574
#
# Expected score = -4.27, Entropy = 2.26 bits
#
# Lowest score = -15, Highest score = 13
#
#
# mean= -4.1839 , stdev= 9.2265
#
A B C D E F G H I K L M N P Q R S T V W Y Z ..
6.0 -3.0 -6.0 -3.0 -2.0 -7.0 -1.0 -6.0 -4.0 -6.0 -5.0 -4.0 -3.0 -1.0 -3.0 -6.0 0.0 0.0 -2.0-12.0 -7.0 -2.0 A
6.0-11.0 6.0 2.0 -9.0 -2.0 -1.0 -5.0 -2.0 -8.0 -8.0 6.0 -6.0 -2.0 -6.0 -1.0 -2.0 -7.0 -9.0 -6.0 1.0 B
9.0-12.0-12.0 -11.0 -8.0 -7.0 -5.0-12.0 -13.0-12.0 -9.0 -7.0-12.0 -7.0 -2.0 -7.0 -5.0-14.0 -3.0-12.0 C
7.0 3.0 -13.0 -3.0 -3.0 -6.0 -4.0 -11.0 -9.0 2.0 -7.0 -2.0 -9.0 -3.0 -4.0 -7.0-13.0 -10.0 2.0 D
7.0 -12.0 -3.0 -4.0 -5.0 -4.0 -8.0 -6.0 -1.0 -5.0 2.0 -8.0 -4.0 -5.0 -6.0-15.0 -8.0 6.0 E
9.0 -8.0 -5.0 -2.0-12.0 -2.0 -3.0 -8.0 -9.0-11.0 -8.0 -6.0 -8.0 -7.0 -4.0 2.0-12.0 F
6.0 -8.0 -9.0 -6.0 -9.0 -7.0 -2.0 -5.0 -6.0 -8.0 -1.0 -5.0 -5.0-13.0 -12.0 -4.0 G
9.0 -8.0 -5.0 -5.0 -9.0 1.0 -3.0 1.0 -1.0 -5.0 -6.0 -6.0 -6.0 -3.0 0.0 H
8.0 -5.0 -1.0 0.0 -4.0 -7.0 -7.0 -5.0 -6.0 -2.0 2.0-12.0 -5.0 -5.0 I
6.0 -7.0 -1.0 0.0 -6.0 -2.0 1.0 -3.0 -2.0 -8.0-10.0 -8.0 -3.0 K
7.0 1.0 -6.0 -6.0 -4.0 -8.0 -7.0 -6.0 -2.0 -5.0 -6.0 -6.0 L
11.0 -7.0 -7.0 -3.0 -3.0 -5.0 -3.0 -1.0-11.0 -10.0 -4.0 M
7.0 -5.0 -3.0 -5.0 0.0 -1.0 -7.0 -7.0 -4.0 -2.0 N
8.0 -2.0 -3.0 -1.0 -3.0 -5.0-12.0 -12.0 -3.0 P
8.0 -1.0 -4.0 -5.0 -6.0-11.0 -10.0 6.0 Q
8.0 -2.0 -5.0 -7.0 -1.0 -9.0 -3.0 R
6.0 1.0 -5.0 -4.0 -6.0 -4.0 S
7.0 -2.0-11.0 -6.0 -5.0 T
7.0-14.0 -6.0 -6.0 V
13.0 -4.0-13.0 W
10.0 -8.0 Y
6.0 Z
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