1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
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#
# This matrix was produced by "pam" Version 1.0.6 [28-Jul-93]
#
# PAM 80 substitution matrix, scale = ln(2)/2 = 0.346574
#
# Expected score = -2.55, Entropy = 1.44 bits
#
# Lowest score = -11, Highest score = 13
#
#
# mean= -2.4689 , stdev= 5.7799
#
A B C D E F G H I K L M N P Q R S T V W Y Z ..
4.0 -1.0 -4.0 -1.0 -1.0 -5.0 0.0 -4.0 -2.0 -4.0 -4.0 -3.0 -1.0 0.0 -2.0 -4.0 1.0 1.0 0.0 -8.0 -5.0 -1.0 A
5.0 -7.0 5.0 2.0 -7.0 -1.0 0.0 -4.0 -1.0 -6.0 -5.0 4.0 -3.0 0.0 -3.0 0.0 -1.0 -4.0 -7.0 -4.0 2.0 B
9.0 -9.0 -9.0 -8.0 -6.0 -5.0 -4.0 -9.0 -9.0 -8.0 -6.0 -5.0 -9.0 -5.0 -1.0 -4.0 -3.0-10.0 -2.0 -9.0 C
6.0 4.0 -9.0 -1.0 -1.0 -4.0 -2.0 -7.0 -6.0 3.0 -4.0 0.0 -5.0 -1.0 -2.0 -5.0-10.0 -7.0 2.0 D
6.0 -9.0 -2.0 -2.0 -3.0 -2.0 -6.0 -4.0 0.0 -3.0 2.0 -4.0 -2.0 -3.0 -4.0-11.0 -6.0 5.0 E
8.0 -6.0 -3.0 0.0 -9.0 0.0 -2.0 -5.0 -7.0 -8.0 -6.0 -4.0 -5.0 -4.0 -2.0 4.0 -8.0 F
6.0 -5.0 -6.0 -4.0 -7.0 -5.0 -1.0 -3.0 -4.0 -6.0 0.0 -2.0 -3.0-10.0 -8.0 -2.0 G
8.0 -5.0 -3.0 -4.0 -5.0 2.0 -2.0 2.0 0.0 -3.0 -4.0 -4.0 -4.0 -1.0 1.0 H
7.0 -4.0 1.0 1.0 -3.0 -5.0 -4.0 -3.0 -4.0 -1.0 3.0 -8.0 -3.0 -4.0 I
6.0 -5.0 0.0 0.0 -4.0 -1.0 2.0 -2.0 -1.0 -5.0 -7.0 -6.0 -1.0 K
6.0 2.0 -5.0 -4.0 -3.0 -5.0 -5.0 -4.0 0.0 -3.0 -4.0 -4.0 L
9.0 -4.0 -5.0 -2.0 -2.0 -3.0 -2.0 1.0 -7.0 -6.0 -3.0 M
5.0 -3.0 -1.0 -2.0 1.0 0.0 -4.0 -5.0 -3.0 0.0 N
7.0 -1.0 -2.0 0.0 -2.0 -3.0 -9.0 -8.0 -2.0 P
7.0 0.0 -3.0 -3.0 -4.0 -8.0 -7.0 5.0 Q
7.0 -1.0 -3.0 -5.0 0.0 -7.0 -1.0 R
4.0 2.0 -3.0 -3.0 -4.0 -2.0 S
5.0 -1.0 -8.0 -4.0 -3.0 T
6.0-10.0 -5.0 -4.0 V
13.0 -2.0 -9.0 W
9.0 -6.0 Y
5.0 Z
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