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ID ECOLI_PROM_RP70; MATRIX.
AC NS00001;
DT OCT-1993 (CREATED).
DE E. coli RNA POL sigma-70 promoter.
CC
CC Note: The score for T at the 5th position of the TTGACA motif
CC has been changed to 11 in order to reproduce the numbers
CC shown in [Mulligan et al. 1984, NAR 12:789]. The normalization
CC parameters were adjusted manually.
CC
MA /GENERAL_SPEC: ALPHABET='ACGT'; LENGTH=45;
MA /DISJOINT: DEFINITION=PROTECT; N1=37; N2=42;
MA /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=-96.81; R2=0.5931;
MA TEXT='Homology Score';
MA /NORMALIZATION: MODE=2; FUNCTION=LINEAR; R1=-10.198; R2=0.06215;
MA TEXT='Log KBk2';
MA /CUT_OFF: LEVEL=2; SCORE=256; N_SCORE=55.0; MODE=1;
MA /CUT_OFF: LEVEL=1; SCORE=248; N_SCORE=50.0; MODE=1;
MA /CUT_OFF: LEVEL=0; SCORE=240; N_SCORE=45.0; MODE=1;
MA /DEFAULT: B0=*; B1=*; E0=*; E1=*; SY_M='*'; II=*;
MA /I: B0= 0; B1= 0;
MA /M: M= 11, 3, 3, 4;
MA /M: M= 8, 4, 2, 7;
MA /M: M= 8, 2, 4, 7;
MA /M: M= 7, 4, 2, 8;
MA /M: M= 8, 4, 4, 5;
MA /M: M= 7, 3, 5, 6;
MA /M: M= 3, 5, 5, 8;
MA /M: M= 5, 2, 5, 9;
MA /M: M= 5, 8, 5, 3;
MA /M: M= 0, 1, 2,17; SY='T';
MA /M: M= 1, 1, 1,18; SY='T';
MA /M: M= 0, 2,17, 2; SY='G';
MA /M: M= 14, 3, 1, 4; SY='A';
MA /M: M= 5,11, 2, 3; SY='C';
MA /M: M= 9, 2, 3, 7; SY='A';
MA /M: M= 5, 5, 3, 9;
MA /M:
MA /M:
MA /M:
MA /M:
MA /M:
MA /M:
MA /M:
MA /M:
MA /M:
MA /I: MD=0; MM=1;
MA /I: DM=1;
MA /I: DM=1;
MA /I: DM=6;
MA /I: DM=14;
MA /I: DM=6;
MA /I: DM=1;
MA /M: M= 4, 5, 2,10;
MA /M: M= 5, 4, 5, 6;
MA /M: M= 3, 5, 5, 8;
MA /M: M= 4, 4, 8, 5;
MA /M: M= 4, 5, 7, 6;
MA /M: M= 0, 2, 2,17; SY='T';
MA /M: M= 20, 0, 0, 1; SY='A';
MA /M: M= 5, 3, 3, 9; SY='T';
MA /M: M= 12, 3, 3, 3; SY='A';
MA /M: M= 11, 4, 3, 4; SY='A';
MA /M: M= 0, 1, 0,20; SY='T';
MA /M: M= 7, 2, 6, 6;
MA /M: M= 4, 7, 5, 5;
MA /M: M= 6, 6, 6, 4;
MA /I: E0=0; E1= 0;
CC /TAXO-RANGE=???P?;
CC /SITE=10-15, -35 regions; /SITE=37-42, -10 regions;
//
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