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#!/bin/bash
#version 0.1
#Information in case we can't find the correct binary
help()
{
echo "Please make sure you are running the latest version of this install script"
echo "You can always build PHAST from source, it only takes about 5 minutes to do so, just visit http://compgen.bscb.cornell.edu/phast/ for instructions"
updatetype=none
}
#Make sure the user is root, otherwise we can not change necessary files
if [ `id -u` != '0' ]; then
echo "ERROR: Phast requires root privilages to install"
echo "ERROR: Please re-run this installer with root privilages"
exit 1
fi
if [ -z "$1" ]; then
echo "Making sure you have the latest installer"
rm -f phast_latest_install.sh
wget http://compgen.bscb.cornell.edu/phast/install.sh -O phast_latest_install.sh
if [ $? -eq 0 ]; then
if [ -f phast_latest_install.sh ]; then
sh phast_latest_install.sh update
rm -f phast_latest_install.sh
exit $?
fi
else
curl http://compgen.bscb.cornell.edu/phast/install.sh -o phast_latest_install.sh
if [ $? -eq 0 ]; then
if [ -f phast_latest_install.sh ]; then
sh phast_latest_install.sh update
rm -f phast_latest_install.sh
exit $?
fi
else
echo "Could not check for installer updates"
fi
fi
fi
#If we have previously run this script, remove old phast repos
#if [ -f /etc/apt/sources.list ]; then
# sed 's/.*phast.*//g' -i /etc/apt/sources.list
#elif [ -f /etc/yum.conf ]; then
# awk '/\[all\]/{c=3}!(c&&c--)' /etc/yum.conf > /etc/yumtemp.conf && mv /etc/yumtemp.conf /etc/yum.conf
#fi
#dectect OS and add correct link to compgen repository
if [ -f /etc/apt/sources.list ]; then
updatetype=apt
echo "Apt-Get compatable system"
mkdir -p /etc/apt/sources.list.d
echo "deb http://compgen.bscb.cornell.edu/phast/apt all free" > /etc/apt/sources.list.d/phast.list
elif [ -f /etc/yum.conf ]; then
updatetype=yum
echo "Detected yum compatable system"
yumfile=/etc/yum.repos.d/phast.repo
mkdir -p `dirname $yumfile`
echo "[phast]" > $yumfile
echo "name=phast" >> $yumfile
echo "baseurl=http://compgen.bscb.cornell.edu/phast/yum" >> $yumfile
echo "gpgcheck=0" >> $yumfile
elif [ "`cat /etc/*release | grep -i opensuse`" != "" ]; then
updatetype=zypper
echo "Detected zypper compatable system"
zypper sa -t YUM http://compgen.bscb.cornell.edu/phast/yum all
elif [ "`cat /etc/*release | grep -i mandriva`" != "" ]; then
echo "Running on Mandriva, urpmi repository not yet available"
help
else
echo "Sorry, there is no pre-compiled binaries for your distribution."
help
fi
#Perform the actual install of phast
if [ "$updatetype" = "apt" ]; then
echo "We need to run 'apt-get update' now"
echo "Press enter to proceed"
read proceed
apt-get update
echo "Now installing phast via 'apt-get install phast'"
apt-get install phast
elif [ "$updatetype" = "yum" ]; then
echo "Now installing phast via 'yum install phast'"
yum install phast
elif [ "$updatetype" = "zypper" ]; then
echo "Now installing phast via 'zypper in phast'"
zypper in phast
fi
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