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/***************************************************************************
* PHAST: PHylogenetic Analysis with Space/Time models
* Copyright (c) 2002-2005 University of California, 2006-2010 Cornell
* University. All rights reserved.
*
* This source code is distributed under a BSD-style license. See the
* file LICENSE.txt for details.
***************************************************************************/
/** @file genepred.h
Reading and writing of genepred files, used for UCSC Genome Browser.
\ingroup feature
*/
#ifndef GENEPRED_H
#define GENEPRED_H
#include <gff.h>
/** Fill out a GFF_Set from a genepred file.
@param[in] F Gff file to read from
@param[out] gff Gff object populated with data from file F
*/
void gff_read_from_genepred(GFF_Set *gff, FILE *F);
/** Write a GFF_Set in genepred format.
@pre Features must already be grouped as desired.
@param OUTF Output Stream
@param feats Set to write to output stream
@note Features will be sorted within groups as a side effect.
*/
void gff_print_genepred(FILE *OUTF, GFF_Set *feats);
#endif
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