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Author: Andreas Tille <tille@debian.org>
Last-Update: Fri, 27 May 2016 18:06:35 +0200
Description: Use Debian packaged libpcre
--- a/src/make-include.mk
+++ b/src/make-include.mk
@@ -57,7 +57,7 @@ else
endif
PHAST_VERSION=\"$(shell cat ${PHAST}/version)\"
-CFLAGS += -I${INC} -DPHAST_VERSION=${PHAST_VERSION} -DPHAST_HOME=\"${PHAST_HOME}\" -I${PHAST}/src/lib/pcre -fno-strict-aliasing
+CFLAGS += -I${INC} -DPHAST_VERSION=${PHAST_VERSION} -DPHAST_HOME=\"${PHAST_HOME}\" -fno-strict-aliasing
LIBPATH = -L${LIB}
# uncomment these lines for profiling (add -g for line-by-line
@@ -138,8 +138,8 @@ else
ifdef CLAPACKPATH
ifneq ($(TARGETOS), Windows)
- LIBS = -lphast -llapack -ltmglib -lblas -lc -lm
+ LIBS = -lphast -llapack -ltmglib -lblas -lc -lm -lpcre
else
CFLAGS += -I${CLAPACKPATH}/INCLUDE -I${F2CPATH} -DPCRE_STATIC
LIBS = -lphast -lm ${CLAPACKPATH}/liblapack.a ${CLAPACKPATH}/libf2c.a ${CLAPACKPATH}/libblas.a
endif
# IMPORTANT: use the following two lines instead for versions of CLAPACK
--- a/src/lib/Makefile
+++ b/src/lib/Makefile
@@ -3,7 +3,7 @@ PHAST := ${PHAST}/..
CDIR = ${PWD}
-PACKAGES=base msa feature hmm phylo phylo_hmm motif pcre
+PACKAGES=base msa feature hmm phylo phylo_hmm motif
ifdef RPHAST
PACKAGES += rphast
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