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|
Description: force sequential access to libphast.a.
When building phast using make's parallel capabilities, the build
almost always fails because the many subdirectories of src/lib/*/ are
trying to add objects to the libphast.a static library at the same
time, resulting in corruption and weird error messages like:
.
gcc -L/<<PKGBUILDDIR>>/src/dless/../../lib -o /<<PKGBUILDDIR>>/src/dless/../../bin/dless dless.o phast_bd_phylo_hmm.o -lphast -llapack -ltmglib -lblas -lc -lm -lpcre2-8 -Wl,-z,relro -Wl,-z,now
/usr/bin/ld: /<<PKGBUILDDIR>>/src/dless/../../lib/libphast.a: error adding symbols: malformed archive
collect2: error: ld returned 1 exit status
.
Placing .NOTPARALLEL pseudo targets at strategic locations looks to
reliably resolve the problem while preserving otherwise some level of
parallelism where the library is not involved. Checkout the GNU Make
manual's chapter about [Disabling Parallel Execution] for further
details.
.
[Disabling Parallel Execution]: https://www.gnu.org/software/make/manual/html_node/Parallel-Disable.html
Author: Étienne Mollier <emollier@debian.org>
Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1091563
Forwarded: https://github.com/CshlSiepelLab/phast/pull/80
Last-Update: 2025-01-05
---
This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
--- phast.orig/src/lib/base/Makefile
+++ phast/src/lib/base/Makefile
@@ -17,3 +17,5 @@
clean:
rm -f *.o
+
+.NOTPARALLEL:
--- phast.orig/src/lib/feature/Makefile
+++ phast/src/lib/feature/Makefile
@@ -17,3 +17,5 @@
clean:
rm -f *.o
+
+.NOTPARALLEL:
--- phast.orig/src/lib/hmm/Makefile
+++ phast/src/lib/hmm/Makefile
@@ -17,3 +17,5 @@
clean:
rm -f *.o
+
+.NOTPARALLEL:
--- phast.orig/src/lib/motif/Makefile
+++ phast/src/lib/motif/Makefile
@@ -17,3 +17,5 @@
clean:
rm -f *.o
+
+.NOTPARALLEL:
--- phast.orig/src/lib/msa/Makefile
+++ phast/src/lib/msa/Makefile
@@ -17,3 +17,5 @@
clean:
rm -f *.o
+
+.NOTPARALLEL:
--- phast.orig/src/lib/phylo/Makefile
+++ phast/src/lib/phylo/Makefile
@@ -17,3 +17,5 @@
clean:
rm -f *.o
+
+.NOTPARALLEL:
--- phast.orig/src/lib/phylo_hmm/Makefile
+++ phast/src/lib/phylo_hmm/Makefile
@@ -17,3 +17,5 @@
clean:
rm -f *.o
+
+.NOTPARALLEL:
--- phast.orig/src/lib/rphast/Makefile
+++ phast/src/lib/rphast/Makefile
@@ -14,3 +14,5 @@
clean:
rm -f *.o
+
+.NOTPARALLEL:
|
