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Source: phybin
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 9),
haskell-devscripts (>= 0.8),
cdbs,
ghc,
libghc-hunit-dev,
libghc-async-dev,
libghc-fgl-dev,
libghc-graphviz-dev,
libghc-hierarchical-clustering-dev,
libghc-parsec3-dev,
libghc-prettyclass-dev,
libghc-split-dev (>= 0.2),
libghc-text-dev,
libghc-vector-dev (>= 0.10),
libghc-test-framework-dev,
libghc-test-framework-hunit-dev,
libghc-test-framework-th-dev
Standards-Version: 3.9.6
Vcs-Browser: http://anonscm.debian.org/cgit/debian-med/phybin.git
Vcs-Git: git://anonscm.debian.org/debian-med/phybin.git
Homepage: http://www.cs.indiana.edu/~rrnewton/projects/phybin/
Package: phybin
Architecture: any
Depends: ${haskell:Depends},
${shlibs:Depends},
${misc:Depends}
Recommends: ${haskell:Recommends}
Suggests: ${haskell:Suggests}
Conflicts: ${haskell:Conflicts}
Provides: ${haskell:Provides}
Description: binning/clustering newick trees by topology
PhyBin is a simple command line tool that classifies a set of Newick
tree files by their topology. The purpose of it is to take a large set
of tree files and browse through the most common tree topologies.
.
It can do simple binning of identical trees or more complex clustering
based on an all-to-all Robinson-Foulds distance matrix.
.
phybin produces output files that characterize the size and contents of
each bin or cluster (including generating GraphViz-based visual
representations of the tree topologies).
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