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Source: phybin
Standards-Version: 4.7.2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:
Andreas Tille <tille@debian.org>,
Section: science
Priority: optional
Build-Depends:
dh-sequence-haskell,
debhelper-compat (= 13),
ghc,
libghc-async-dev,
libghc-fgl-dev,
libghc-graphviz-dev,
libghc-hierarchical-clustering-dev,
libghc-hunit-dev,
libghc-parsec3-dev,
libghc-prettyclass-dev,
libghc-split-dev,
libghc-tasty-dev,
libghc-tasty-hunit-dev,
libghc-tasty-th-dev,
libghc-text-dev,
libghc-vector-dev,
Vcs-Browser: https://salsa.debian.org/med-team/phybin
Vcs-Git: https://salsa.debian.org/med-team/phybin.git
Homepage: https://www.cs.indiana.edu/~rrnewton/projects/phybin/
Package: phybin
Architecture: any
Depends:
${haskell:Depends},
${misc:Depends},
${shlibs:Depends},
Recommends:
${haskell:Recommends},
Suggests:
${haskell:Suggests},
Conflicts:
${haskell:Conflicts},
Provides:
${haskell:Provides},
Description: binning/clustering newick trees by topology
PhyBin is a simple command line tool that classifies a set of Newick
tree files by their topology. The purpose of it is to take a large set
of tree files and browse through the most common tree topologies.
.
It can do simple binning of identical trees or more complex clustering
based on an all-to-all Robinson-Foulds distance matrix.
.
phybin produces output files that characterize the size and contents of
each bin or cluster (including generating GraphViz-based visual
representations of the tree topologies).
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