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LIBS = -lm
DESTDIR = .
PHYLIPBINDIR = $(DESTDIR)/usr/lib/phylip/bin
FONTDIR = $(DESTDIR)/usr/lib/phylip
BINDIR = $(DESTDIR)/usr/bin
DOCDIR = $(DESTDIR)/usr/doc/phylip
#CFLAGS = -Wall -O
CFLAGS = -g
CC = cc $(CFLAGS)
# -O
PROGS = clique consense contml contrast dnacomp dnadist \
dnainvar dnaml dnamlk dnamove dnapars dnapenny \
dolmove dollop dolpenny drawgram drawtree factor \
fitch gendist kitsch mix move neighbor penny \
protdist protpars restml retree seqboot
WRAPPER = phylip
all: introduce $(PROGS)
@echo done.
install: all
@echo "Installing PHYLIP v3.5c binaries in $(PHYLIPBINDIR)"
@cp $(PROGS) $(PHYLIPBINDIR)
@echo "Installing PHYLIP v3.5c wrapper in $(BINDIR)"
@cp $(WRAPPER) $(BINDIR)
@echo "Installing PHYLIP v3.5c documentations in $(DOCDIR)"
@cp *.doc $(DOCDIR)
@echo "Installing PHYLIP v3.5c fonts in $(FONTDIR)"
@cp font* $(FONTDIR)
@ln -sf font1 $(FONTDIR)/fontfile
@cp dna-example $(DOCDIR)/examples/infile
@cp README-example $(DOCDIR)/examples/README
@cp -r -p -v tests $(DOCDIR)/examples
clique: clique.c phylip.h
$(CC) clique.c $(LIBS) -o clique
consense: consense.c phylip.h
$(CC) consense.c $(LIBS) -o consense
contml: contml.c phylip.h
$(CC) contml.c $(LIBS) -o contml
contrast: contrast.c phylip.h
$(CC) contrast.c $(LIBS) -o contrast
dnacomp: dnacomp.c phylip.h
$(CC) dnacomp.c $(LIBS) -o dnacomp
dnadist: dnadist.c phylip.h
$(CC) dnadist.c $(LIBS) -o dnadist
dnainvar: dnainvar.c phylip.h
$(CC) dnainvar.c $(LIBS) -o dnainvar
dnaml: dnaml.o dnaml2.o
$(CC) dnaml.o dnaml2.o $(LIBS) -o dnaml
dnaml.o: dnaml.c phylip.h
$(CC) -c dnaml.c
dnaml2.o: dnaml2.c phylip.h
$(CC) -c dnaml2.c
dnamlk: dnamlk.o dnamlk2.o
$(CC) dnamlk.o dnamlk2.o $(LIBS) -o dnamlk
dnamlk.o: dnamlk.c phylip.h
$(CC) -c dnamlk.c
dnamlk2.o: dnamlk2.c phylip.h
$(CC) -c dnamlk2.c
dnamove: dnamove.c phylip.h
$(CC) dnamove.c $(LIBS) -o dnamove
dnapenny: dnapenny.c phylip.h
$(CC) dnapenny.c $(LIBS) -o dnapenny
dnapars: dnapars.c phylip.h
$(CC) dnapars.c $(LIBS) -o dnapars
dolmove: dolmove.c phylip.h
$(CC) dolmove.c $(LIBS) -o dolmove
dollop: dollop.c phylip.h
$(CC) dollop.c $(LIBS) -o dollop
dolpenny: dolpenny.c phylip.h
$(CC) dolpenny.c $(LIBS) -o dolpenny
drawgraphics.o: drawgraphics.c phylip.h drawgraphics.h
$(CC) -c drawgraphics.c
drawtree.o: drawtree.c
$(CC) -c drawtree.c
drawgram.o: drawgram.c
$(CC) -c drawgram.c
drawgram: drawgram.o phylip.h drawgraphics.o
$(CC) drawgraphics.o drawgram.o $(LIBS) -o drawgram
drawtree: drawtree.o phylip.h drawgraphics.o
$(CC) drawgraphics.o drawtree.o $(LIBS) -o drawtree
factor: factor.c phylip.h
$(CC) factor.c $(LIBS) -o factor
fitch: fitch.c phylip.h
$(CC) fitch.c $(LIBS) -o fitch
gendist: gendist.c phylip.h
$(CC) gendist.c $(LIBS) -o gendist
kitsch: kitsch.c phylip.h
$(CC) kitsch.c $(LIBS) -o kitsch
mix: mix.o mix2.o
$(CC) mix.o mix2.o $(LIBS) -o mix
mix.o: mix.c phylip.h
$(CC) -c mix.c
mix2.o: mix2.c phylip.h
$(CC) -c mix2.c
move: move.c phylip.h
$(CC) move.c $(LIBS) -o move
neighbor: neighbor.c phylip.h
$(CC) neighbor.c $(LIBS) -o neighbor
penny: penny.c phylip.h
$(CC) penny.c $(LIBS) -o penny
protdist: protdist.c phylip.h
$(CC) protdist.c $(LIBS) -o protdist
protpars: protpars.c phylip.h
$(CC) protpars.c $(LIBS) -o protpars
restml: restml.o restml2.o phylip.h
$(CC) restml.o restml2.o $(LIBS) -o restml
restml.o: restml.c
$(CC) -c restml.c
restml2.o: restml2.c
$(CC) -c restml2.c
retree: retree.c phylip.h
$(CC) retree.c $(LIBS) -o retree
seqboot: seqboot.c phylip.h
$(CC) seqboot.c $(LIBS) -o seqboot
introduce:
@echo "Building PHYLIP version 3.5c "
clean:
@rm $(PROGS) *.o
|
