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#!/usr/bin/make -f
# debian/rules for phyml
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
BUILDARCH := $(shell dpkg-architecture -qDEB_BUILD_ARCH)
include /usr/share/dpkg/default.mk
PKGBEAGLE=$(DEB_SOURCE)-beagle
%:
dh $@
override_dh_autoreconf:
dh_autoreconf --as-needed
override_dh_auto_configure:
override_dh_auto_build:
# According to README you need different configure options to get different executables
# Here we hack in a full build process for phyml executable
# The hack includes saving the documentation from beeing cleaned up
mv doc/phyml-manual.pdf .
dh_auto_configure
dh_auto_build -- LDFLAGS="$(LDFLAGS)"
# move phyml binary to temporary dir inside debian/
mkdir -p $(CURDIR)/debian/bin
mv src/phyml $(CURDIR)/debian/bin/phyml
ifeq ($(BUILDARCH),$(filter $(BUILDARCH), do_not_build_this)) # amd64 i386 arm64 armhf)) # upstream confirmed that beagle support is to weak
$(MAKE) distclean
dh_auto_configure -- --enable-beagle
dh_auto_build -- CFLAGS="$(CFLAGS) -I/usr/include/libhmsbeagle-1 -DBEAGLE" LDFLAGS="$(LDFLAGS)"
# move phyml binary to temporary dir inside debian/
mkdir -p $(CURDIR)/debian/$(PKGBEAGLE)/usr/lib/phyml/bin
mv src/phyml-beagle $(CURDIR)/debian/$(PKGBEAGLE)/usr/lib/phyml/bin
endif
$(MAKE) distclean
dh_auto_configure -- --enable-phyml-mpi
dh_auto_build -- LDFLAGS="$(LDFLAGS)"
# move phyml binary to temporary dir inside debian/
# mkdir -p $(CURDIR)/debian/bin
mv src/phyml-mpi $(CURDIR)/debian/bin/phyml-mpi
ifeq ($(BUILDPHYTIME), 'yes')
$(MAKE) distclean
dh_auto_configure -- --enable-phytime
dh_auto_build -- LDFLAGS="$(LDFLAGS)" CPPFLAGS="-DPHYREX $(CPPFLAGS)"
endif
mv phyml-manual.pdf doc
override_dh_auto_install:
dh_auto_install
# install phyml binary we have kept safe above
mkdir -p $(CURDIR)/debian/$(DEB_SOURCE)/usr/lib/$(DEB_SOURCE)/bin
mv $(CURDIR)/debian/bin/* $(CURDIR)/debian/$(DEB_SOURCE)/usr/lib/$(DEB_SOURCE)/bin
chrpath --delete debian/$(DEB_SOURCE)/usr/lib/$(DEB_SOURCE)/bin/phyml*
override_dh_auto_clean:
# save pdf from cleaning
mv doc/phyml-manual.pdf .
dh_auto_clean
mv phyml-manual.pdf doc
# remove temporary bin dir for phyml (see above hack)
rm -rf debian/bin
rm -rf doc/Makefile
override_dh_installdocs:
dh_installdocs
mv $(CURDIR)/debian/phyml/usr/share/doc/phyml/phyml-manual.pdf $(CURDIR)/debian/phyml/usr/share/doc/phyml/phyml_manual.pdf
override_dh_compress:
dh_compress --exclude=.pdf
override_dh_fixperms:
dh_fixperms
find debian/*/usr/share/doc -name "*.nxs" -exec chmod -x \{\} \;
find debian/*/usr/share/doc -name "*.xml" -exec chmod -x \{\} \;
find debian/*/usr/share/doc -name "*.mat" -exec chmod -x \{\} \;
find debian/*/usr/share/doc -name "*.txt" -exec chmod -x \{\} \;
chmod -x debian/*/usr/share/doc/phyml/examples/nucleic
chmod -x debian/*/usr/share/doc/phyml/examples/proteic
override_dh_dwz:
echo "Do not run dh_dwz"
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