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physamp 1.1.0-6
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# Created on 24/10/14 by jdutheil

bppalnoptim param=AlnOptimFasttree.bpp
bppalnoptim param=AlnOptimAuto.bpp LINKAGE=complete
bppalnoptim param=AlnOptimAuto.bpp LINKAGE=single
bppalnoptim param=AlnOptimAuto.bpp LINKAGE=average
bppalnoptim param=AlnOptimAuto.bpp LINKAGE=median
bppalnoptim param=AlnOptimAuto.bpp LINKAGE=centroid
bppalnoptim param=AlnOptimAuto.bpp LINKAGE=ward

#Get a selection of sequences:
bppalnoptim param=AlnOptimFasttreeStop.bpp