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# This file may be used to create an environment using:
# $ conda create --name pigx_rnaseq --file <this file>
## make sure to have the following conda channels in ~/.condarc file
#channels:
# - anaconda-fusion
# - defaults
# - bioconda
# - r
# - pypi
# - conda-forge
snakemake=4.0.0
fastqc=0.11.5
multiqc=0.9
star=2.5.1b
trim-galore=0.4.3
htseq=0.9.1
samtools=1.3
deeptools=2.5.3
python=3.5.4
#additional requirements for R libraries:
#r-essentials
r-data.table
r-rlang
r-rmarkdown
r-ggplot2
r-ggrepel
bioconductor-deseq2
r-dt
r-pheatmap
r-corrplot
r-reshape2
r-plotly
r-scales
r-crosstalk
r-gprofiler
bioconductor-summarizedexperiment
bioconductor-rtracklayer
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