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#include "piler2.h"
static void WritePile(FILE *f, const PileData &Pile, int PileIndex)
{
int ContigFrom;
const char *ContigLabel = GlobalToContig(Pile.From, &ContigFrom);
const int Length = Pile.To - Pile.From + 1;
const int ContigTo = ContigFrom + Length - 1;
const char Strand = Pile.Rev ? '-' : '+';
// GFF fields are:
// <seqname> <source> <feature> <start> <end> <score> <strand> <frame> [attributes] [comments]
// 0 1 2 3 4 5 6 7 8 9
fprintf(f, "%s\tpiler\tpile\t%d\t%d\t0\t%c\t.\tPile %d\n",
ContigLabel,
ContigFrom + 1,
ContigTo + 1,
Strand,
PileIndex);
}
void WritePiles(const char *FileName, const PileData *Piles, int PileCount)
{
FILE *f = OpenStdioFile(FileName, FILEIO_MODE_WriteOnly);
for (int PileIndex = 0; PileIndex < PileCount; ++PileIndex)
{
const PileData &Pile = Piles[PileIndex];
WritePile(f, Pile, PileIndex);
}
fclose(f);
}
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