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#include "piler2.h"
void Credits()
{
static bool Displayed = false;
if (Displayed)
return;
fprintf(stderr, "\n" PILER_LONG_VERSION "\n");
fprintf(stderr, "http://www.drive5.com/piler\n");
fprintf(stderr, "Written by Robert C. Edgar\n");
fprintf(stderr, "This software is donated to the public domain.\n");
fprintf(stderr, "Please visit web site for requested citation.\n");
Displayed = true;
}
void Usage()
{
Credits();
fprintf(stderr,
"\n"
"Usage:\n"
" piler -trs <hitfile> -out <trsfile> [options]\n"
" piler -trs2fasta <trsfile> -seq <fastafile> [-path <path>] [-maxfam <maxfam>]\n"
" piler -cons <alnfile> -out <fastafile> -label <label>\n"
" piler -annot <gff> -rep <repfile> -out <annotfile>\n"
" piler -help\n"
" piler -version\n"
"\n"
"Use -quiet to suppress progress messages\n"
"\n"
"-trs options:\n"
" -mincover <n>\n"
" -maxlengthdiffpct <n>\n"
" -piles <pilefile>\n"
" -images <imagefile>\n"
" -multihit\n"
"\n"
"For further information, please see the User Guide.\n");
}
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