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#include "pilercr.h"
static void LogStdStr(const std::string &s)
{
for (size_t i = 0; i < s.size(); ++i)
Log("%c", s[i]);
}
void LogAA(const ArrayAln &AA)
{
const int RepeatCount = (int) AA.LeftFlanks.size();
assert(RepeatCount == AA.Repeats.size());
assert(RepeatCount == AA.Spacers.size());
Log("AA Id=%d Pos=%d RepeatCount=%d\n", AA.Id, AA.Pos, RepeatCount);
for (int RepeatIndex = 0; RepeatIndex < RepeatCount; ++RepeatIndex)
{
const std::string &LeftFlank = AA.LeftFlanks[RepeatIndex];
const std::string &Repeat = AA.Repeats[RepeatIndex];
const std::string &Spacer = AA.Spacers[RepeatIndex];
LogStdStr(LeftFlank);
Log(" ");
LogStdStr(Repeat);
Log(" ");
LogStdStr(Spacer);
Log("\n");
}
}
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