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pilercr 1.06%2Bdfsg-4
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  • area: main
  • in suites: bullseye
  • size: 804 kB
  • sloc: cpp: 14,339; makefile: 67; sh: 3

Folder: 1.06+dfsg-4

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d d rwxr-xr-x 4,096 .pc
d d rwxr-xr-x 4,096 debian
- - rwxr-xr-x 368 Makefile
- - rwxr-xr-x 2,938 acceptaa.cpp
- - rwxr-xr-x 747 accepthit.cpp
- - rwxr-xr-x 1,389 alignarrays.cpp
- - rwxr-xr-x 937 alignclust.cpp
- - rwxr-xr-x 424 alignprofs.cpp
- - rwxr-xr-x 4,558 aligntraps.cpp
- - rwxr-xr-x 5,353 alnarray.cpp
- - rwxr-xr-x 21,953 alngivenpath.cpp
- - rwxr-xr-x 2,595 alpha.cpp
- - rwxr-xr-x 239 assert.cpp
- - rwxr-xr-x 3,310 bittb.cpp
- - rwxr-xr-x 2,597 clustcons.cpp
- - rwxr-xr-x 3,735 clustconsr.cpp
- - rwxr-xr-x 5,721 cmp.cpp
- - rwxr-xr-x 999 comp.cpp
- - rwxr-xr-x 5,101 cons.cpp
- - rwxr-xr-x 493 distcalc.cpp
- - rwxr-xr-x 1,028 distcalc.h
- - rwxr-xr-x 2,381 distfunc.cpp
- - rwxr-xr-x 807 distfunc.h
- - rwxr-xr-x 13,170 dp.cpp
- - rwxr-xr-x 12,119 estring.cpp
- - rwxr-xr-x 527 estring.h
- - rwxr-xr-x 768 expandpiles.cpp
- - rwxr-xr-x 14,361 filterb.cpp
- - rwxr-xr-x 12,929 filterb2.cpp
- - rwxr-xr-x 5,468 findarrays.cpp
- - rwxr-xr-x 2,395 findpiles.cpp
- - rwxr-xr-x 12,348 fixbounds.cpp
- - rwxr-xr-x 859 forkmer.h
- - rwxr-xr-x 1,702 getarraydata.cpp
- - rwxr-xr-x 4,919 getccs.cpp
- - rwxr-xr-x 1,463 getconsaa.cpp
- - rwxr-xr-x 186 getgdtree.cpp
- - rwxr-xr-x 4,481 getparams.cpp
- - rwxr-xr-x 145 getsubseq.cpp
- - rwxr-xr-x 17,237 glbalign.cpp
- - rwxr-xr-x 1,257 hitstoimages.cpp
- - rwxr-xr-x 3,651 info.cpp
- - rwxr-xr-x 1,677 intlist.h
- - rwxr-xr-x 6,471 kmerdist.cpp
- - rwxr-xr-x 930 log.cpp
- - rwxr-xr-x 763 logaa.cpp
- - rwxr-xr-x 1,050 loghits.cpp
- - rwxr-xr-x 1,032 main.cpp
- - rwxr-xr-x 3,113 makecontigmap.cpp
- - rwxr-xr-x 662 makegraph.cpp
- - rwxr-xr-x 2,146 makeindex.cpp
- - rwxr-xr-x 830 mem.cpp
- - rwxr-xr-x 6,063 mergearrays.cpp
- - rwxr-xr-x 10,421 mergefilterhits.cpp
- - rwxr-xr-x 50 mk
- - rwxr-xr-x 5,390 mkrootmsa.cpp
- - rwxr-xr-x 19,448 msa.cpp
- - rwxr-xr-x 5,133 msa.h
- - rwxr-xr-x 742 multaln.cpp
- - rwxr-xr-x 3,872 multaln.h
- - rwxr-xr-x 238 myassert.h
- - rwxr-xr-x 5,741 options.cpp
- - rwxr-xr-x 5,286 outarray.cpp
- - rwxr-xr-x 5,809 outdetail.cpp
- - rwxr-xr-x 4,182 outdetailaa.cpp
- - rwxr-xr-x 790 outlocalaln.cpp
- - rwxr-xr-x 1,016 params.cpp
- - rwxr-xr-x 1,185 params.h
- - rwxr-xr-x 7,071 pilercr.cpp
- - rwxr-xr-x 9,374 pilercr.h
- - rwxr-xr-x 9,719 pilercr.vcxproj
- - rwxr-xr-x 4,490 proffrommsa.cpp
- - rwxr-xr-x 4,260 profile.h
- - rwxr-xr-x 4,921 progaln.cpp
- - rwxr-xr-x 2,534 progress.cpp
- - rwxr-xr-x 355 progress.h
- - rwxr-xr-x 7,331 pwpath.cpp
- - rwxr-xr-x 2,430 pwpath.h
- - rwxr-xr-x 1,015 quit.cpp
- - rwxr-xr-x 630 readfilterhits.cpp
- - rwxr-xr-x 4,616 readmfa.cpp
- - rwxr-xr-x 693 revcomp.cpp
- - rwxr-xr-x 134 savefhits.cpp
- - rwxr-xr-x 4,705 savefilterhit.cpp
- - rwxr-xr-x 1,775 saveseqs.cpp
- - rwxr-xr-x 1,330 savetraps.cpp
- - rwxr-xr-x 776 scoremx.cpp
- - rwxr-xr-x 5,809 seq.cpp
- - rwxr-xr-x 1,945 seq.h
- - rwxr-xr-x 6,949 seqvect.cpp
- - rwxr-xr-x 1,369 seqvect.h
- - rwxr-xr-x 1,355 sw.h
- - rwxr-xr-x 4,676 swsimple.cpp
- - rwxr-xr-x 3,472 tbsw.cpp
- - rwxr-xr-x 28,698 tree.cpp
- - rwxr-xr-x 9,534 tree.h
- - rwxr-xr-x 2,271 types.h
- - rwxr-xr-x 9,865 upgma.cpp
- - rwxr-xr-x 828 usage.cpp
- - rwxr-xr-x 7,350 utils.cpp
- - rwxr-xr-x 239 utils.h
- - rwxr-xr-x 1,425 utils_linux.cpp
- - rwxr-xr-x 329 utils_other.cpp
- - rwxr-xr-x 721 utils_unix.cpp
- - rwxr-xr-x 698 utils_win32.cpp
- - rwxr-xr-x 3,402 validaa.cpp
- - rwxr-xr-x 1,057 writearrays.cpp
- - rwxr-xr-x 3,544 writegff.cpp
- - rwxr-xr-x 710 writepiles.cpp