1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
|
name: Unit Tests
on:
push:
pull_request:
schedule:
- cron: '00 4 * * *' # daily at 4AM
jobs:
build:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ['3.9', '3.10', "3.11", "3.12"]
optional-deps: ['no-extras', 'extras']
fail-fast: false
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install test requirements
shell: bash -l {0}
run: |
set -vxeuo pipefail
python -m pip install -v .
if [[ ${{ matrix.optional-deps }} = extras ]]; then
python -mpip install av jinja2 jpype1 matplotlib moviepy scikit-image tifffile
fi
python -m pip install coverage pytest
python -m pip list
- name: Test with pytest
shell: bash -l {0}
run: |
set -vxeuo pipefail
python -c 'import pims.bioformats; pims.bioformats.download_jar()'
coverage run -m pytest -svra
coverage report
- name: Upload code coverage
uses: codecov/codecov-action@v3
|
