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Source: pims
Section: python
Maintainer: Debian GIS Project <pkg-grass-devel@lists.alioth.debian.org>
Uploaders: Antonio Valentino <antonio.valentino@tiscali.it>
Build-Depends: debhelper-compat (= 13),
dh-sequence-python3,
python3-all,
python3-av <!nocheck>,
python3-jinja2 <!nocheck>,
python3-imageio,
python3-matplotlib <!nocheck>,
python3-numpy,
python3-packaging,
python3-pil <!nocheck>,
python3-pytest <!nocheck>,
python3-setuptools,
python3-slicerator,
python3-tifffile,
python3-versioneer
Standards-Version: 4.7.3
Testsuite: autopkgtest-pkg-pybuild
Homepage: https://github.com/soft-matter/pims
Vcs-Browser: https://salsa.debian.org/debian-gis-team/pims
Vcs-Git: https://salsa.debian.org/debian-gis-team/pims.git
Package: python3-pims
Architecture: all
Depends: ${python3:Depends},
${misc:Depends}
Recommends: python3-pil
Suggests: python3-matplotlib
Description: Python Image Sequence
Scientific video can be packaged in various ways: familiar video
formats like .AVI and .MOV, folders full of numbered images, or
"stacks" of TIFF images. Each of these requires a separate Python
module. And, once loaded, they have different methods for "accessing
individual images, looping through the images in bulk, accessing a
specific range, or dealing with multidimensional files".
PIMS can do all of these using a consistent interface, handling the
differences between different inputs invisibly.
.
Formats readable by pims include:
* Directories or zipfiles of still images (most formats, including
TIFF, JPEG, PNG, BMP), and TIFF stacks
* Microscope images supported by the Bio-formats project, including
Leica, Nikon, Olympus, and Zeiss formats. Requires separate
installation; see below.
* Movie formats and codecs supported by ffmpeg, including AVI,
QuickTime MOV, and H.264 (MP4). May require separate installation.
* CINE files from Vision Research cameras
* SEQ files from NorPix StreamPix software
.
PIMS is based on readers by:
* scikit-image
* ffmpeg and PyAV (video formats such as AVI, MOV)
* jpype (interface with Bio-formats)
* Pillow (improved TIFF support)
* tifffile (alternative TIFF support)
* pims_nd2 (improved Nikon .nd2 support)
* imageio (a multi-purpose reader package that reads and writes
many formats)
* moviepy (a Python module that supports video editing)
* nd2reader (a Pure Python module for reading Nikon NIS Elements
ND2 images and metadata)
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