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Installation
============
pIRS requires the zlib library (http://www.zlib.net/) to be installed.
The Boost library is no longer needed by pIRS.
To compile, run the commands:
$ ./configure
$ make
$ make install
In addition, the `configure' script recognizes the following options:
--prefix=PREFIX
Set installation root. e.g. if you use --prefix=/usr, we install pirs
to /usr/bin/pirs, and the profiles to /usr/share/pirs. pIRS must be
able to find its profiles in order to simulate reads, unless you run
with `--no-subst-errors --no-gc-bias --no-indel-errors' to disable all
the bias (not recommended).
--disable-threads
Build single-threaded program.
--disable-sse2
Use the generic Mersenne twister random number generator algorithm
rather than the SSE2-accelerated version.
--disable-pirs-simulate
Only support the `pirs diploid' command.
--disable-pirs-diploid
Only support the `pirs simulate' command.
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