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all: simulator stator symlinks
PERL_LIST = stator/baseCallingMatrix/baseCalling_Matrix_analyzer \
stator/baseCallingMatrix/baseCalling_Matrix_calculator \
stator/baseCallingMatrix/baseCalling_Matrix_merger \
stator/alignment_stator \
stator/indelstat_sam_bam \
stator/gcContCvgBias/gc_coverage_bias_plot
simulator:
cd ./src/pirs && ${MAKE} -f gccMakefile
stator:
cd ./src/stator/gcContCvgBias && ${MAKE}
symlinks:
-@ln -s ./src/pirs/pirs 2> /dev/null
-@ln -s ./src/stator/gcContCvgBias/gc_coverage_bias 2> /dev/null
-@ln -s ./src/stator/alignment_stator.pl alignment_stator 2> /dev/null
-@for P in ${PERL_LIST}; do \
ln -s ./src/$${P}.pl `basename $${P}` 2> /dev/null; \
done
test: all
cd ./src/pirs && ${MAKE} -f gccMakefile test
cd ./src/stator/gcContCvgBias && ${MAKE} test
distclean:
cd ./src/pirs && ${MAKE} -f gccMakefile distclean
cd ./src/stator/gcContCvgBias && ${MAKE} distclean
-rm pIRS_*.tgz
tDATE := $(shell date +%Y%m%d)
tTIME := $(shell date +%H%M%S)
dist: all distclean
@echo "Packing pIRS_$(tDATE).tar.gz ..."
@tar -czf /var/tmp/pIRS_$(tDATE)_$(tTIME).tgz --exclude '.git*' .
@mv /var/tmp/pIRS_$(tDATE)_$(tTIME).tgz ./pIRS_$(tDATE).tgz
clean: distclean
cd ./src/pirs && ${MAKE} -f gccMakefile clean
cd ./src/stator/gcContCvgBias && ${MAKE} clean
-rm pirs gc_coverage_bias
-@for P in ${PERL_LIST}; do \
rm `basename $${P}`; \
done
.PHONY push:
git push github master
git push
git push google master
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